Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ABNP42_RS17205 Genome accession   NZ_CP157868
Coordinates   3328188..3328499 (-) Length   103 a.a.
NCBI ID   WP_094910792.1    Uniprot ID   -
Organism   Priestia flexa strain Antcr29     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3323188..3333499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP42_RS17170 (ABNP42_17140) - 3324754..3325575 (+) 822 WP_094910785.1 YqhG family protein -
  ABNP42_RS17175 (ABNP42_17145) - 3325613..3325804 (-) 192 WP_094910786.1 YqzE family protein -
  ABNP42_RS17180 (ABNP42_17150) - 3325949..3326575 (+) 627 WP_131888291.1 cupin domain-containing protein -
  ABNP42_RS17185 (ABNP42_17155) comGG 3326626..3327045 (-) 420 WP_094910788.1 competence type IV pilus minor pilin ComGG -
  ABNP42_RS17190 (ABNP42_17160) comGF 3327008..3327436 (-) 429 WP_094910789.1 competence type IV pilus minor pilin ComGF -
  ABNP42_RS17195 (ABNP42_17165) - 3327433..3327768 (-) 336 WP_094910790.1 type II secretion system protein -
  ABNP42_RS17200 (ABNP42_17170) comGD 3327752..3328222 (-) 471 WP_247600456.1 competence type IV pilus minor pilin ComGD -
  ABNP42_RS17205 (ABNP42_17175) comGC 3328188..3328499 (-) 312 WP_094910792.1 competence type IV pilus major pilin ComGC Machinery gene
  ABNP42_RS17210 (ABNP42_17180) comGB 3328513..3329505 (-) 993 WP_256993311.1 competence type IV pilus assembly protein ComGB -
  ABNP42_RS17215 (ABNP42_17185) comGA 3329552..3330610 (-) 1059 WP_094910794.1 competence type IV pilus ATPase ComGA Machinery gene
  ABNP42_RS17220 (ABNP42_17190) - 3330819..3331202 (-) 384 WP_094910795.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ABNP42_RS17225 (ABNP42_17195) - 3331497..3331736 (+) 240 WP_094910796.1 DUF2626 domain-containing protein -
  ABNP42_RS17230 (ABNP42_17200) - 3331780..3332412 (-) 633 WP_350019614.1 MBL fold metallo-hydrolase -
  ABNP42_RS17235 (ABNP42_17205) - 3332609..3332782 (+) 174 WP_025911564.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11030.93 Da        Isoelectric Point: 6.9475

>NTDB_id=1008583 ABNP42_RS17205 WP_094910792.1 3328188..3328499(-) (comGC) [Priestia flexa strain Antcr29]
MLKNEKGFTLIEMLIVMLVITVLLLIMVPNVLKHNAVINNKGCSALVKTVEAQVQVYELENGKKPTLNDLESGGYLKEGT
VCPNGSKITIGTDGRVSASDGNS

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1008583 ABNP42_RS17205 WP_094910792.1 3328188..3328499(-) (comGC) [Priestia flexa strain Antcr29]
ATGTTAAAAAATGAGAAAGGTTTTACTTTAATTGAGATGCTCATTGTTATGTTAGTTATTACAGTGCTATTGCTTATTAT
GGTGCCAAACGTATTAAAGCACAATGCTGTTATTAACAATAAAGGGTGTTCTGCTTTAGTGAAGACAGTCGAAGCACAAG
TACAGGTGTATGAGCTTGAAAACGGAAAAAAACCTACTTTAAACGATCTTGAAAGCGGAGGGTACTTAAAAGAAGGAACG
GTGTGTCCAAATGGTTCCAAAATTACAATAGGCACGGATGGGCGCGTATCAGCGAGTGATGGAAACTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

55.319

91.262

0.505
  comGC Staphylococcus aureus MW2

41.935

90.291

0.379
  comGC Staphylococcus aureus N315

41.935

90.291

0.379

Multiple sequence alignment