Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABNF92_RS07230 Genome accession   NZ_CP157802
Coordinates   1574287..1574811 (-) Length   174 a.a.
NCBI ID   WP_069185089.1    Uniprot ID   A0A1E3C5N3
Organism   Marinobacter sp. MMG032     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1569287..1579811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNF92_RS07205 (ABNF92_07205) mshL 1569749..1571461 (-) 1713 WP_209398983.1 pilus (MSHA type) biogenesis protein MshL -
  ABNF92_RS07210 (ABNF92_07210) - 1571479..1571784 (-) 306 WP_227514620.1 hypothetical protein -
  ABNF92_RS07215 (ABNF92_07215) gspM 1571828..1572517 (-) 690 WP_349343833.1 type II secretion system protein GspM -
  ABNF92_RS07220 (ABNF92_07220) - 1572517..1573122 (-) 606 WP_349343834.1 PilN domain-containing protein -
  ABNF92_RS07225 (ABNF92_07225) - 1573119..1574051 (-) 933 WP_349343835.1 biogenesis protein MshI -
  ABNF92_RS07230 (ABNF92_07230) ssb 1574287..1574811 (-) 525 WP_069185089.1 single-stranded DNA-binding protein Machinery gene
  ABNF92_RS07235 (ABNF92_07235) - 1574869..1576239 (-) 1371 WP_349343836.1 MFS transporter -
  ABNF92_RS07240 (ABNF92_07240) uvrA 1576426..1579248 (+) 2823 WP_349343837.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19012.05 Da        Isoelectric Point: 4.9464

>NTDB_id=1008365 ABNF92_RS07230 WP_069185089.1 1574287..1574811(-) (ssb) [Marinobacter sp. MMG032]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQLVPKTEWHRVVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGGEGGMNQGAPAGRPQQSGYNAPAGQQNNPPPQSGGYSNQPSQGS
MPEPVDDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1008365 ABNF92_RS07230 WP_069185089.1 1574287..1574811(-) (ssb) [Marinobacter sp. MMG032]
ATGGCACGAGGCGTAAACAAAGTAATTCTGATCGGTAACCTGGGACAGGACCCGGATACCCGCTACACCCCTAACGGTAA
TGCCGTTGTGAACCTGAATCTGGCAACAGACGAAAGCTACAAGGATCGTCAGACCGGGCAATTGGTGCCGAAAACCGAAT
GGCACCGGGTTGTCATGTTCGGCAAGATCGCCGAAGTGGCCGGCCAGTATCTGCGCAAGGGCTCGAAGGTCTACATTGAG
GGCAAGCTGCAGACGCGCAAATGGCAGAACAAGGAAGGTCAGGATGTCTACACCACCGAGGTTGTGGTGGATATCAACGG
CCAGATGCAGATGCTCGACAGCCGTGGCGGCGAAGGCGGTATGAATCAGGGCGCCCCGGCAGGGCGGCCTCAGCAGTCCG
GCTATAATGCCCCGGCGGGCCAACAGAACAACCCGCCACCGCAGTCTGGTGGGTACAGCAATCAGCCGTCGCAGGGCAGC
ATGCCGGAGCCGGTAGACGACTTTGACGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3C5N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.598
  ssb Glaesserella parasuis strain SC1401

54.348

100

0.575
  ssb Neisseria gonorrhoeae MS11

44.134

100

0.454
  ssb Neisseria meningitidis MC58

43.575

100

0.448

Multiple sequence alignment