Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABL310_RS05890 Genome accession   NZ_CP157794
Coordinates   1268327..1268866 (-) Length   179 a.a.
NCBI ID   WP_349370764.1    Uniprot ID   -
Organism   MAG: Salinarimonas sp. isolate ALCB114379_MAG3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1263327..1273866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL310_RS05865 (ABL310_05865) - 1263507..1263848 (+) 342 WP_349370759.1 response regulator -
  ABL310_RS05870 (ABL310_05870) - 1263936..1264223 (-) 288 WP_349370760.1 PilZ domain-containing protein -
  ABL310_RS05875 (ABL310_05875) - 1264314..1265480 (-) 1167 WP_349370761.1 AI-2E family transporter -
  ABL310_RS05880 (ABL310_05880) - 1265655..1265906 (+) 252 WP_349370762.1 hypothetical protein -
  ABL310_RS05885 (ABL310_05885) - 1266105..1268267 (+) 2163 WP_349370763.1 HAMP domain-containing methyl-accepting chemotaxis protein -
  ABL310_RS05890 (ABL310_05890) ssb 1268327..1268866 (-) 540 WP_349370764.1 single-stranded DNA-binding protein Machinery gene
  ABL310_RS05895 (ABL310_05895) - 1269011..1269475 (-) 465 WP_349370765.1 transcriptional regulator -
  ABL310_RS05900 (ABL310_05900) - 1269500..1269826 (-) 327 WP_349370766.1 DUF4258 domain-containing protein -
  ABL310_RS05905 (ABL310_05905) - 1269963..1270508 (-) 546 WP_349370767.1 adenine phosphoribosyltransferase -
  ABL310_RS05910 (ABL310_05910) - 1270555..1271430 (-) 876 WP_349370768.1 S-methyl-5'-thioadenosine phosphorylase -
  ABL310_RS05915 (ABL310_05915) - 1271588..1272460 (-) 873 WP_349370769.1 cytochrome c1 -
  ABL310_RS05920 (ABL310_05920) - 1272501..1273784 (-) 1284 WP_349370770.1 cytochrome b/b6 -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19260.07 Da        Isoelectric Point: 5.1142

>NTDB_id=1008346 ABL310_RS05890 WP_349370764.1 1268327..1268866(-) (ssb) [MAG: Salinarimonas sp. isolate ALCB114379_MAG3]
MMAGVNKVILVGNLGRDPEVRRTSNGDPVVNLRLATTETWRDKGTGERREKTEWHSVVIFNEPLGRIAEQYLKKGSSVYI
EGQLQTRKWTDREGNEKYTTEIVLQRYRGELTLLGGRGGGGGGGGGDYEGGGDEYGGGGDDFGRSSPMERRPATAGGSGG
QQGGGGSSRYNDLDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1008346 ABL310_RS05890 WP_349370764.1 1268327..1268866(-) (ssb) [MAG: Salinarimonas sp. isolate ALCB114379_MAG3]
ATGATGGCCGGCGTGAACAAGGTGATCCTGGTGGGCAATCTCGGGCGCGATCCCGAGGTGCGACGCACCTCGAACGGCGA
CCCGGTCGTGAACCTCCGGCTCGCCACGACGGAGACGTGGCGCGACAAGGGCACGGGCGAGCGCCGCGAGAAGACCGAGT
GGCACAGCGTGGTGATCTTCAACGAGCCCCTCGGCCGCATCGCCGAGCAATATCTGAAGAAGGGCTCGTCGGTGTATATC
GAGGGCCAGCTCCAGACCCGGAAGTGGACAGACCGGGAAGGCAACGAGAAGTACACGACCGAGATCGTGCTCCAGCGCTA
TCGCGGCGAGCTCACCCTGCTTGGCGGCCGCGGAGGCGGCGGCGGCGGGGGCGGCGGCGACTACGAGGGCGGCGGCGACG
AGTACGGCGGCGGCGGCGACGATTTCGGCCGCTCCTCCCCGATGGAGCGCCGCCCGGCCACGGCCGGCGGCAGCGGCGGC
CAGCAGGGCGGCGGCGGCTCCTCGCGCTACAACGATCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.087

100

0.492
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.464
  ssb Neisseria meningitidis MC58

41.848

100

0.43
  ssb Neisseria gonorrhoeae MS11

41.848

100

0.43

Multiple sequence alignment