Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | UXR36_RS05280 | Genome accession | NZ_CP157773 |
| Coordinates | 1086071..1086541 (+) | Length | 156 a.a. |
| NCBI ID | WP_029549393.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain BSN89 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1076342..1118262 | 1086071..1086541 | within | 0 |
Gene organization within MGE regions
Location: 1076342..1118262
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UXR36_RS05200 (UXR36_005200) | - | 1076342..1077727 (-) | 1386 | WP_047230699.1 | recombinase family protein | - |
| UXR36_RS05205 (UXR36_005205) | - | 1077920..1078624 (-) | 705 | WP_017804779.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| UXR36_RS05210 (UXR36_005210) | - | 1078660..1078845 (-) | 186 | WP_024936996.1 | hypothetical protein | - |
| UXR36_RS05215 (UXR36_005215) | - | 1078842..1078988 (-) | 147 | WP_001049401.1 | hypothetical protein | - |
| UXR36_RS05220 (UXR36_005220) | - | 1079000..1079722 (-) | 723 | WP_024936995.1 | XRE family transcriptional regulator | - |
| UXR36_RS05225 (UXR36_005225) | - | 1079864..1080082 (+) | 219 | WP_001198673.1 | helix-turn-helix transcriptional regulator | - |
| UXR36_RS05230 (UXR36_005230) | - | 1080098..1080886 (+) | 789 | WP_047230698.1 | phage antirepressor KilAC domain-containing protein | - |
| UXR36_RS05235 (UXR36_005235) | - | 1080903..1081097 (+) | 195 | WP_047230697.1 | hypothetical protein | - |
| UXR36_RS05240 (UXR36_005240) | - | 1081301..1081531 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| UXR36_RS05245 (UXR36_005245) | - | 1081581..1081718 (+) | 138 | WP_000230552.1 | hypothetical protein | - |
| UXR36_RS05250 (UXR36_005250) | - | 1081711..1081872 (+) | 162 | WP_000066026.1 | DUF1270 family protein | - |
| UXR36_RS05255 (UXR36_005255) | - | 1081966..1082226 (+) | 261 | WP_000291090.1 | DUF1108 family protein | - |
| UXR36_RS05260 (UXR36_005260) | - | 1082235..1082498 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| UXR36_RS05265 (UXR36_005265) | - | 1082507..1084450 (+) | 1944 | WP_031762972.1 | AAA family ATPase | - |
| UXR36_RS05270 (UXR36_005270) | - | 1084452..1085372 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| UXR36_RS05275 (UXR36_005275) | - | 1085453..1086070 (+) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| UXR36_RS05280 (UXR36_005280) | ssbA | 1086071..1086541 (+) | 471 | WP_029549393.1 | single-stranded DNA-binding protein | Machinery gene |
| UXR36_RS05285 (UXR36_005285) | - | 1086571..1087455 (+) | 885 | WP_031873996.1 | DnaD domain protein | - |
| UXR36_RS05290 (UXR36_005290) | - | 1087462..1087680 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| UXR36_RS05295 (UXR36_005295) | - | 1087689..1088093 (+) | 405 | WP_070869111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| UXR36_RS05300 (UXR36_005300) | - | 1088106..1088477 (+) | 372 | WP_061650592.1 | SA1788 family PVL leukocidin-associated protein | - |
| UXR36_RS05305 (UXR36_005305) | - | 1088478..1088726 (+) | 249 | WP_001126839.1 | phi PVL orf 51-like protein | - |
| UXR36_RS05310 (UXR36_005310) | - | 1088790..1089137 (+) | 348 | WP_000982695.1 | YopX family protein | - |
| UXR36_RS05315 (UXR36_005315) | - | 1089134..1089523 (+) | 390 | WP_070869110.1 | acetyltransferase | - |
| UXR36_RS05320 (UXR36_005320) | - | 1089516..1089770 (+) | 255 | WP_001065084.1 | DUF1024 family protein | - |
| UXR36_RS05325 (UXR36_005325) | - | 1089757..1089927 (+) | 171 | WP_000714409.1 | hypothetical protein | - |
| UXR36_RS05330 (UXR36_005330) | - | 1089920..1090453 (+) | 534 | WP_000185642.1 | dUTP pyrophosphatase | - |
| UXR36_RS05335 (UXR36_005335) | - | 1090490..1090777 (+) | 288 | WP_000195801.1 | DUF1381 domain-containing protein | - |
| UXR36_RS05340 (UXR36_005340) | - | 1090770..1091005 (+) | 236 | Protein_1045 | hypothetical protein | - |
| UXR36_RS05345 (UXR36_005345) | - | 1090995..1091384 (+) | 390 | WP_025174390.1 | hypothetical protein | - |
| UXR36_RS05350 (UXR36_005350) | - | 1091381..1091554 (+) | 174 | WP_000595303.1 | transcriptional activator RinB | - |
| UXR36_RS05355 (UXR36_005355) | - | 1091555..1091956 (+) | 402 | WP_000286968.1 | hypothetical protein | - |
| UXR36_RS05360 (UXR36_005360) | - | 1092308..1092802 (+) | 495 | WP_000594087.1 | terminase small subunit | - |
| UXR36_RS05365 (UXR36_005365) | - | 1092795..1094018 (+) | 1224 | WP_001037578.1 | PBSX family phage terminase large subunit | - |
| UXR36_RS05370 (UXR36_005370) | - | 1094015..1095439 (+) | 1425 | WP_000177422.1 | phage portal protein | - |
| UXR36_RS05375 (UXR36_005375) | - | 1095408..1096361 (+) | 954 | WP_000184133.1 | phage head morphogenesis protein | - |
| UXR36_RS05380 (UXR36_005380) | - | 1096363..1096569 (+) | 207 | WP_000346033.1 | hypothetical protein | - |
| UXR36_RS05385 (UXR36_005385) | - | 1096672..1097256 (+) | 585 | WP_001019219.1 | DUF4355 domain-containing protein | - |
| UXR36_RS05390 (UXR36_005390) | - | 1097273..1098187 (+) | 915 | WP_000235168.1 | phage major capsid protein | - |
| UXR36_RS05395 (UXR36_005395) | - | 1098199..1098342 (+) | 144 | WP_000002931.1 | hypothetical protein | - |
| UXR36_RS05400 (UXR36_005400) | - | 1098348..1098698 (+) | 351 | WP_000177351.1 | phage head-tail adapter protein | - |
| UXR36_RS05405 (UXR36_005405) | - | 1098710..1099045 (+) | 336 | WP_000483041.1 | phage head closure protein | - |
| UXR36_RS05410 (UXR36_005410) | - | 1099032..1099445 (+) | 414 | WP_001151330.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| UXR36_RS05415 (UXR36_005415) | - | 1099458..1099883 (+) | 426 | WP_000270192.1 | DUF3168 domain-containing protein | - |
| UXR36_RS05420 (UXR36_005420) | - | 1099884..1100441 (+) | 558 | WP_000057582.1 | tail protein | - |
| UXR36_RS05425 (UXR36_005425) | - | 1100508..1101014 (+) | 507 | WP_061839760.1 | tail assembly chaperone | - |
| UXR36_RS05430 (UXR36_005430) | - | 1101059..1101343 (+) | 285 | WP_000880587.1 | hypothetical protein | - |
| UXR36_RS05435 (UXR36_005435) | - | 1101347..1104490 (+) | 3144 | WP_070869108.1 | terminase | - |
| UXR36_RS05440 (UXR36_005440) | - | 1104505..1105446 (+) | 942 | WP_015984522.1 | phage tail domain-containing protein | - |
| UXR36_RS05445 (UXR36_005445) | - | 1105457..1107343 (+) | 1887 | WP_001122001.1 | SGNH/GDSL hydrolase family protein | - |
| UXR36_RS05450 (UXR36_005450) | - | 1107356..1109254 (+) | 1899 | WP_033861309.1 | hypothetical protein | - |
| UXR36_RS05455 (UXR36_005455) | - | 1109254..1111077 (+) | 1824 | WP_336389720.1 | BppU family phage baseplate upper protein | - |
| UXR36_RS05460 (UXR36_005460) | - | 1111077..1111454 (+) | 378 | WP_000705914.1 | DUF2977 domain-containing protein | - |
| UXR36_RS05465 (UXR36_005465) | - | 1111464..1111637 (+) | 174 | WP_001790193.1 | XkdX family protein | - |
| UXR36_RS05470 (UXR36_005470) | - | 1111678..1111977 (+) | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| UXR36_RS05475 (UXR36_005475) | - | 1112114..1113988 (+) | 1875 | WP_033861356.1 | glucosaminidase domain-containing protein | - |
| UXR36_RS05480 (UXR36_005480) | - | 1114001..1115173 (+) | 1173 | WP_015978297.1 | BppU family phage baseplate upper protein | - |
| UXR36_RS05485 (UXR36_005485) | - | 1115179..1115574 (+) | 396 | WP_000398878.1 | hypothetical protein | - |
| UXR36_RS05490 (UXR36_005490) | - | 1115630..1116067 (+) | 438 | WP_000354128.1 | phage holin | - |
| UXR36_RS05495 (UXR36_005495) | - | 1116048..1117493 (+) | 1446 | WP_061641004.1 | SH3 domain-containing protein | - |
| UXR36_RS05500 (UXR36_005500) | - | 1117742..1117894 (+) | 153 | WP_078103528.1 | hypothetical protein | - |
| UXR36_RS05505 (UXR36_005505) | - | 1117965..1118075 (+) | 111 | WP_031922866.1 | hypothetical protein | - |
| UXR36_RS05510 (UXR36_005510) | - | 1118077..1118262 (+) | 186 | WP_001286804.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17654.38 Da Isoelectric Point: 4.6228
>NTDB_id=1008255 UXR36_RS05280 WP_029549393.1 1086071..1086541(+) (ssbA) [Staphylococcus aureus strain BSN89]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1008255 UXR36_RS05280 WP_029549393.1 1086071..1086541(+) (ssbA) [Staphylococcus aureus strain BSN89]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.017 |
100 |
0.692 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |