Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   UXR36_RS01790 Genome accession   NZ_CP157773
Coordinates   397183..397686 (+) Length   167 a.a.
NCBI ID   WP_031825290.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN89     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 392183..402686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR36_RS01760 (UXR36_001760) - 393123..393968 (+) 846 WP_001621659.1 ParB/RepB/Spo0J family partition protein -
  UXR36_RS01765 (UXR36_001765) - 394122..395003 (+) 882 WP_000373079.1 mechanosensitive ion channel family protein -
  UXR36_RS01770 (UXR36_001770) - 395033..395236 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  UXR36_RS01775 (UXR36_001775) ychF 395248..396345 (+) 1098 WP_001218729.1 redox-regulated ATPase YchF -
  UXR36_RS01780 (UXR36_001780) - 396431..396622 (-) 192 WP_001052483.1 hypothetical protein -
  UXR36_RS01785 (UXR36_001785) rpsF 396866..397162 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  UXR36_RS01790 (UXR36_001790) ssbA 397183..397686 (+) 504 WP_031825290.1 single-stranded DNA-binding protein Machinery gene
  UXR36_RS01795 (UXR36_001795) rpsR 397738..397980 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  UXR36_RS01800 (UXR36_001800) - 398218..399225 (-) 1008 Protein_357 Abi family protein -
  UXR36_RS01805 (UXR36_001805) - 399231..399889 (-) 659 Protein_358 tyrosine-type recombinase/integrase -
  UXR36_RS01810 (UXR36_001810) - 400144..400761 (+) 618 WP_029549319.1 toxin -
  UXR36_RS01815 (UXR36_001815) - 401127..401495 (+) 369 WP_000849162.1 YxeA family protein -
  UXR36_RS01820 (UXR36_001820) - 401676..402248 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  UXR36_RS01825 (UXR36_001825) - 402386..402649 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18525.09 Da        Isoelectric Point: 4.7305

>NTDB_id=1008245 UXR36_RS01790 WP_031825290.1 397183..397686(+) (ssbA) [Staphylococcus aureus strain BSN89]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1008245 UXR36_RS01790 WP_031825290.1 397183..397686(+) (ssbA) [Staphylococcus aureus strain BSN89]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATC
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

54.386

100

0.557
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

63.473

0.377
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment