Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAN986_RS27090 Genome accession   NZ_CP157763
Coordinates   6015252..6015818 (+) Length   188 a.a.
NCBI ID   WP_047218907.1    Uniprot ID   -
Organism   Delftia sp. DS1230     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6010252..6020818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAN986_RS27080 uvrA 6010535..6013642 (-) 3108 WP_047218908.1 excinuclease ABC subunit UvrA -
  AAN986_RS27085 - 6013916..6015091 (+) 1176 WP_034348262.1 MFS transporter -
  AAN986_RS27090 ssb 6015252..6015818 (+) 567 WP_047218907.1 single-stranded DNA-binding protein Machinery gene
  AAN986_RS27095 - 6015905..6016402 (+) 498 WP_047218906.1 hypothetical protein -
  AAN986_RS27100 - 6016660..6018183 (+) 1524 WP_047218905.1 SulP family inorganic anion transporter -
  AAN986_RS27105 - 6018580..6018888 (+) 309 WP_227469571.1 hypothetical protein -
  AAN986_RS27110 - 6018891..6019583 (+) 693 WP_016449342.1 hypothetical protein -
  AAN986_RS27115 paaE 6019617..6020714 (-) 1098 WP_047218904.1 1,2-phenylacetyl-CoA epoxidase subunit PaaE -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20433.57 Da        Isoelectric Point: 5.9554

>NTDB_id=1008156 AAN986_RS27090 WP_047218907.1 6015252..6015818(+) (ssb) [Delftia sp. DS1230]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADTMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMATPAPRQAPA
QRPAPAPMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1008156 AAN986_RS27090 WP_047218907.1 6015252..6015818(+) (ssb) [Delftia sp. DS1230]
ATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACCTCGGGCGCGACCCCGAAATGCGCACCTTCCCGAGTGGCGATCA
GGTGGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACGGGCGAGAACAAGGAAGCCACCGAGTGGC
ACCGCGTGGTCTTCAACGGCCGCCTGGCCGAAATCGTGGGCCAGTACCTGCGCAAGGGCAGCCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGCGCCGACACCATGCA
GATGCTGGGCAGCCGCCAAGGCGGCGGCGGTGGCCAGCAAGGCGGCGGCTATGGCGATGAAGGCTATGGCGACAGCGGCT
ACGACGCCCCTCCCCAGCAGCAACAGCGCCGCCCGGCCCCTGCCCCCATGGCAACGCCTGCCCCGCGCCAGGCCCCTGCC
CAGCGCCCCGCCCCCGCACCCATGGCACCCCCGCCGCAGCGCGCAGCCTCGGGCTTTGACGACATGGATGACGACATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.553
  ssb Glaesserella parasuis strain SC1401

53.093

100

0.548
  ssb Neisseria gonorrhoeae MS11

46.032

100

0.463
  ssb Neisseria meningitidis MC58

44.974

100

0.452

Multiple sequence alignment