Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   Q9L42_RS06500 Genome accession   NZ_CP157743
Coordinates   1328701..1329762 (+) Length   353 a.a.
NCBI ID   WP_305909236.1    Uniprot ID   A0AAU7NXT8
Organism   Methylomarinum sp. Ch1-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1323701..1334762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L42_RS06485 (Q9L42_006485) rpmE 1324364..1324564 (+) 201 WP_305909239.1 50S ribosomal protein L31 -
  Q9L42_RS06490 (Q9L42_006490) - 1324617..1325924 (+) 1308 WP_305909238.1 citrate synthase -
  Q9L42_RS06495 (Q9L42_006495) - 1326126..1328486 (-) 2361 WP_349432355.1 penicillin-binding protein 1A -
  Q9L42_RS06500 (Q9L42_006500) pilM 1328701..1329762 (+) 1062 WP_305909236.1 pilus assembly protein PilM Machinery gene
  Q9L42_RS06505 (Q9L42_006505) - 1329762..1330331 (+) 570 WP_305909235.1 PilN domain-containing protein -
  Q9L42_RS06510 (Q9L42_006510) - 1330328..1330939 (+) 612 WP_305909234.1 type 4a pilus biogenesis protein PilO -
  Q9L42_RS06515 (Q9L42_006515) - 1330936..1331493 (+) 558 WP_305909233.1 pilus assembly protein PilP -
  Q9L42_RS06520 (Q9L42_006520) pilQ 1331509..1333728 (+) 2220 WP_349432358.1 type IV pilus secretin PilQ -
  Q9L42_RS06525 (Q9L42_006525) aroK 1333799..1334326 (+) 528 WP_305909230.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38131.40 Da        Isoelectric Point: 4.4666

>NTDB_id=1008101 Q9L42_RS06500 WP_305909236.1 1328701..1329762(+) (pilM) [Methylomarinum sp. Ch1-1]
MSWFRKNQSVVLGIDISTAAIKLLELSKTGARYRVESYAVAPLPQDAVVDKNITDVEVIGNAVKAAVRQSGTRVKQACVA
VAGSSVMTKIISMSASLSDEDMEEQIMVEADQYIPYSLDEVNLDFEVQGPSENNPEMVDVLLAASRRENIDDRIEALSIA
GLKTSIVDVEAFAMENAFALLSDQLPDSVENQTVAIADIGATMATLNVLHNGKTVYTREQGFGGKQLTEEIQRRYGLSYE
EAGLAKKHGGLPDNYATDVLEPFKKAMVQQIARSLQFFVSSSANRGVDSLILAGGCSSIPGLEKMVEHDLGIPSFVANPF
INMALSNKVKPQSLSNDTPAMMIACGLALRSFD

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1008101 Q9L42_RS06500 WP_305909236.1 1328701..1329762(+) (pilM) [Methylomarinum sp. Ch1-1]
ATGAGCTGGTTTAGAAAGAATCAGTCTGTTGTTCTGGGCATAGATATTAGTACGGCAGCGATTAAATTATTAGAATTAAG
TAAGACAGGGGCCCGCTATCGAGTGGAAAGCTATGCTGTTGCGCCTTTGCCACAAGATGCTGTCGTCGACAAAAACATCA
CCGATGTCGAGGTGATCGGTAATGCCGTAAAAGCCGCAGTGAGACAGTCTGGAACCCGTGTCAAGCAAGCCTGCGTTGCC
GTAGCGGGCTCTTCCGTGATGACCAAGATTATTTCGATGTCGGCTTCATTGTCCGATGAAGATATGGAAGAGCAAATCAT
GGTCGAAGCGGATCAGTACATACCTTATTCATTGGACGAAGTGAATTTAGACTTCGAAGTGCAAGGGCCGTCGGAAAACA
ATCCGGAAATGGTCGATGTTTTATTGGCCGCTTCGCGACGGGAAAACATCGATGACAGGATCGAGGCTTTGAGCATCGCC
GGTTTAAAAACCTCGATAGTCGATGTCGAGGCGTTTGCGATGGAGAACGCTTTCGCTTTATTGTCCGACCAGTTGCCGGA
CTCCGTTGAAAATCAGACCGTGGCTATTGCCGATATCGGCGCAACGATGGCGACATTGAATGTATTACATAACGGTAAGA
CCGTATATACGCGGGAGCAGGGCTTTGGCGGCAAACAATTGACCGAAGAAATTCAGCGCCGCTATGGGCTGTCTTATGAA
GAGGCGGGGTTGGCAAAAAAGCATGGCGGCTTGCCCGATAACTATGCCACCGATGTGTTAGAGCCTTTCAAGAAAGCCAT
GGTGCAGCAGATCGCCAGATCCTTGCAGTTTTTCGTGTCGTCCAGCGCCAATCGTGGCGTCGACAGCCTTATACTGGCGG
GCGGTTGTTCGTCGATTCCCGGTCTGGAAAAAATGGTGGAGCACGATCTTGGTATTCCTTCTTTCGTGGCCAATCCATTC
ATCAATATGGCCCTCTCCAATAAGGTGAAGCCGCAAAGTTTAAGTAACGATACACCGGCCATGATGATCGCTTGTGGTCT
GGCGTTAAGGAGTTTCGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.142

100

0.501
  comM Acinetobacter nosocomialis M2

50.142

100

0.501
  comM Acinetobacter baylyi ADP1

48.442

100

0.484
  pilM Legionella pneumophila strain ERS1305867

41.36

100

0.414

Multiple sequence alignment