Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Q9L42_RS02395 Genome accession   NZ_CP157743
Coordinates   424521..425861 (+) Length   446 a.a.
NCBI ID   WP_349431825.1    Uniprot ID   A0AAU7NVK5
Organism   Methylomarinum sp. Ch1-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 419521..430861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L42_RS02380 (Q9L42_002380) sucD 420770..421636 (-) 867 WP_305910030.1 succinate--CoA ligase subunit alpha -
  Q9L42_RS02385 (Q9L42_002385) sucC 421633..422802 (-) 1170 WP_305910029.1 ADP-forming succinate--CoA ligase subunit beta -
  Q9L42_RS02390 (Q9L42_002390) - 422899..424524 (+) 1626 WP_305910028.1 HAMP domain-containing sensor histidine kinase -
  Q9L42_RS02395 (Q9L42_002395) pilR 424521..425861 (+) 1341 WP_349431825.1 sigma-54 dependent transcriptional regulator Regulator
  Q9L42_RS02400 (Q9L42_002400) - 425940..426398 (+) 459 WP_305910027.1 EVE domain-containing protein -
  Q9L42_RS02405 (Q9L42_002405) - 426416..426817 (+) 402 WP_305910026.1 hypothetical protein -
  Q9L42_RS02410 (Q9L42_002410) - 426835..427740 (+) 906 WP_305910025.1 cation diffusion facilitator family transporter -
  Q9L42_RS02415 (Q9L42_002415) - 427790..428362 (-) 573 WP_305910024.1 alkylphosphonate utilization protein -
  Q9L42_RS02420 (Q9L42_002420) ilvA 429170..430702 (-) 1533 WP_305910022.1 threonine ammonia-lyase, biosynthetic -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49994.43 Da        Isoelectric Point: 6.7038

>NTDB_id=1008093 Q9L42_RS02395 WP_349431825.1 424521..425861(+) (pilR) [Methylomarinum sp. Ch1-1]
MTMPTTLVVDDEPDIRELLEITLNRMDIKTICAEDINSARRLLEKNRFDLCLTDMRLPDGDGLDLLEHIQTLGVQTPCAV
ITAHGSMDTAVKAMKKGAFDFLSKPIDLTALRQLVSNALQLSTSQQKQRDRRTRDVLLGESELMRQIRSKIEKVARSQAP
VYISGESGSGKELVARLIHRQSPKNENPFIAVNCGAIPHELMESEFFGHKKGSFTGAVSDKPGLFQAADGGTLFLDEVAD
LPLSLQVKLLRAIQEKKIRPVGEHNEVSVNVRLLSATHKDLAKMVQEGHFRQDLYYRLNVIELNLPPLRARSSDIPQITE
FLLTKLAKANEMPQPKISKSALTALRNYYFPGNVRELENILERALALYDGNVIEQDDLNLPVGSDLAIVDGFNPGKQSLE
EYLEDIEKQALTTALEENRWNKTATAKQLGLTFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1008093 Q9L42_RS02395 WP_349431825.1 424521..425861(+) (pilR) [Methylomarinum sp. Ch1-1]
ATGACTATGCCGACAACCCTGGTCGTTGATGACGAACCCGATATCAGAGAATTGCTCGAAATCACCCTGAATAGGATGGA
TATCAAAACCATTTGCGCCGAGGATATCAACAGCGCCAGACGTTTATTAGAGAAAAATCGTTTCGACCTGTGTCTGACCG
ATATGCGTCTGCCTGACGGCGACGGCCTGGACCTGCTCGAACATATTCAGACCCTCGGCGTCCAAACGCCCTGTGCGGTA
ATTACCGCTCACGGCAGCATGGATACTGCGGTCAAGGCGATGAAGAAAGGCGCTTTCGACTTCCTCTCCAAACCGATCGA
TTTGACCGCGCTGAGACAGTTGGTCAGCAATGCGCTGCAATTGTCCACGTCACAACAGAAACAGCGTGATCGCCGAACGC
GTGATGTATTGTTGGGCGAGTCCGAACTGATGCGCCAGATTCGTTCGAAGATCGAAAAAGTCGCGCGCAGCCAGGCCCCG
GTTTATATCAGCGGTGAATCCGGCTCGGGTAAAGAGCTGGTCGCTCGGCTGATTCATCGACAGAGCCCGAAAAATGAAAA
TCCGTTTATCGCCGTCAACTGCGGCGCGATACCGCATGAATTGATGGAAAGCGAATTCTTCGGTCATAAAAAAGGCAGTT
TTACCGGCGCCGTCTCGGACAAGCCTGGCTTATTCCAGGCGGCCGATGGCGGCACACTGTTTCTCGACGAAGTCGCCGAC
CTGCCCTTGTCCTTGCAAGTCAAATTATTACGCGCGATACAGGAGAAAAAAATCCGTCCGGTCGGCGAGCATAACGAAGT
TTCCGTCAATGTCAGACTACTCAGCGCGACGCATAAGGATCTGGCCAAGATGGTCCAGGAAGGCCATTTCCGCCAAGATC
TCTATTATCGGCTCAACGTCATCGAACTGAACCTGCCGCCATTACGGGCGCGGTCATCCGACATCCCGCAAATCACCGAA
TTTTTGCTGACCAAACTGGCCAAAGCGAATGAAATGCCGCAACCGAAGATTTCAAAGTCGGCGTTGACCGCCCTAAGGAA
CTATTATTTTCCCGGCAACGTACGCGAACTGGAAAATATTCTGGAACGAGCACTGGCTTTATATGACGGCAACGTCATCG
AACAAGATGACCTGAATCTGCCGGTAGGTTCCGACCTAGCCATCGTCGATGGGTTCAATCCGGGCAAACAATCATTGGAA
GAATACCTGGAAGACATCGAAAAACAGGCGTTGACCACAGCCCTGGAGGAAAACCGCTGGAACAAAACCGCTACCGCTAA
ACAACTGGGCCTTACTTTCCGCTCGTTGCGCTACCGTTTGAAAAAACTGGGACTGGATTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-303)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.454

100

0.626
  pilR Acinetobacter baumannii strain A118

49.351

100

0.511
  luxO Vibrio cholerae strain A1552

39.593

99.103

0.392

Multiple sequence alignment