Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABLV49_RS19210 Genome accession   NZ_CP157675
Coordinates   4007657..4008166 (-) Length   169 a.a.
NCBI ID   WP_349278979.1    Uniprot ID   -
Organism   Polaromonas hydrogenivorans strain DSM 17735     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4002657..4013166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLV49_RS19200 (ABLV49_19200) - 4003757..4005094 (-) 1338 WP_349278975.1 MipA/OmpV family protein -
  ABLV49_RS19205 (ABLV49_19205) - 4005266..4007401 (-) 2136 WP_349278977.1 ATP-binding protein -
  ABLV49_RS19210 (ABLV49_19210) ssb 4007657..4008166 (-) 510 WP_349278979.1 single-stranded DNA-binding protein Machinery gene
  ABLV49_RS19215 (ABLV49_19215) - 4008225..4009448 (-) 1224 WP_349281809.1 MFS transporter -
  ABLV49_RS19220 (ABLV49_19220) - 4009619..4010473 (-) 855 WP_349278981.1 sterol desaturase family protein -
  ABLV49_RS19225 (ABLV49_19225) - 4010486..4010827 (-) 342 WP_349278983.1 cysteine rich repeat-containing protein -
  ABLV49_RS19230 (ABLV49_19230) - 4010824..4011243 (-) 420 WP_349278984.1 hypothetical protein -
  ABLV49_RS19235 (ABLV49_19235) - 4011398..4012111 (+) 714 WP_349278986.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18263.37 Da        Isoelectric Point: 6.4848

>NTDB_id=1008057 ABLV49_RS19210 WP_349278979.1 4007657..4008166(-) (ssb) [Polaromonas hydrogenivorans strain DSM 17735]
MASVNKVIIVGNLGKDPEMRSFPSGDQVANVTIATTDKWKDKQSGEMKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQSGVEKYTTEIRADQMQMLGSRQGMGGPAAGHDDGGGYEAPRQAAAPASRPPAPRQAPAPAPAPSRASSGF
DDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1008057 ABLV49_RS19210 WP_349278979.1 4007657..4008166(-) (ssb) [Polaromonas hydrogenivorans strain DSM 17735]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCAAAGACCCCGAAATGCGCAGCTTTCCGAGCGGCGACCA
GGTCGCCAACGTCACCATCGCCACCACCGACAAGTGGAAGGACAAGCAGTCCGGCGAAATGAAGGAAGCCACCGAATGGC
ACCGCGTGGTGTTCAACGGCCGGCTGGCCGAGATCGTCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACCAGAGCGGCGTCGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTCGGCAGCCGCCAGGGCATGGGCGGCCCCGCTGCCGGCCATGACGATGGCGGCGGCTACGAAGCCCCGCGCCAGGCCG
CCGCACCGGCCAGCCGTCCGCCGGCACCCCGGCAGGCCCCGGCACCCGCGCCTGCGCCCTCCAGGGCCTCCAGCGGTTTT
GACGACATGGACGACGACATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.934

100

0.556
  ssb Vibrio cholerae strain A1552

51.381

100

0.55
  ssb Neisseria meningitidis MC58

42.541

100

0.456
  ssb Neisseria gonorrhoeae MS11

41.989

100

0.45

Multiple sequence alignment