Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N917_RS05320 Genome accession   NZ_CP006687
Coordinates   1005535..1006086 (+) Length   183 a.a.
NCBI ID   WP_002865738.1    Uniprot ID   O69302
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168-mcK12E5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1000535..1011086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N917_RS05285 (N917_05310) - 1000726..1001151 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  N917_RS05290 (N917_08690) - 1001215..1001834 (+) 620 Protein_1009 NAD(P)H-dependent oxidoreductase -
  N917_RS05295 (N917_05315) - 1001834..1002439 (+) 606 WP_002853752.1 NAD(P)H-dependent oxidoreductase -
  N917_RS05300 (N917_05320) pgsA 1002564..1003100 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N917_RS05305 (N917_05325) rseP 1003097..1004203 (+) 1107 WP_002934663.1 RIP metalloprotease RseP -
  N917_RS05310 (N917_05330) - 1004196..1005062 (+) 867 WP_002868637.1 VirK family antimicrobial peptide resistance protein -
  N917_RS05315 (N917_05335) rpsF 1005149..1005526 (+) 378 WP_002865739.1 30S ribosomal protein S6 -
  N917_RS05320 (N917_05340) ssb 1005535..1006086 (+) 552 WP_002865738.1 single-stranded DNA-binding protein Machinery gene
  N917_RS05325 (N917_05345) rpsR 1006097..1006357 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  N917_RS05330 (N917_05350) lon 1006418..1008793 (-) 2376 WP_002868636.1 endopeptidase La -
  N917_RS05335 (N917_05355) - 1008810..1009457 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  N917_RS05340 (N917_05360) fliW 1009618..1010007 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  N917_RS05345 (N917_05365) proC 1010007..1010738 (+) 732 WP_002858388.1 pyrroline-5-carboxylate reductase Machinery gene
  N917_RS05350 (N917_05370) ctsT 1010735..1011037 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=100789 N917_RS05320 WP_002865738.1 1005535..1006086(+) (ssb) [Campylobacter jejuni subsp. jejuni NCTC 11168-mcK12E5]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=100789 N917_RS05320 WP_002865738.1 1005535..1006086(+) (ssb) [Campylobacter jejuni subsp. jejuni NCTC 11168-mcK12E5]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAGAGAAACCAAAGCCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O69302

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment