Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABL839_RS02600 Genome accession   NZ_CP157634
Coordinates   559730..560272 (+) Length   180 a.a.
NCBI ID   WP_019655528.1    Uniprot ID   -
Organism   Variovorax paradoxus strain 110B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 554730..565272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL839_RS02590 (ABL839_02580) uvrA 555079..558084 (-) 3006 WP_244164357.1 excinuclease ABC subunit UvrA -
  ABL839_RS02595 (ABL839_02585) - 558230..559621 (-) 1392 WP_019655527.1 chloride channel protein -
  ABL839_RS02600 (ABL839_02590) ssb 559730..560272 (+) 543 WP_019655528.1 single-stranded DNA-binding protein Machinery gene
  ABL839_RS02605 (ABL839_02595) - 560355..561005 (-) 651 WP_019655529.1 hypothetical protein -
  ABL839_RS02610 (ABL839_02600) - 561002..561370 (-) 369 WP_019655530.1 phage integrase family protein -
  ABL839_RS02615 (ABL839_02605) - 561668..562681 (+) 1014 WP_019655531.1 LysR family transcriptional regulator -
  ABL839_RS02620 (ABL839_02610) - 562898..564445 (+) 1548 WP_019655532.1 AMP-binding protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19053.97 Da        Isoelectric Point: 5.9505

>NTDB_id=1007886 ABL839_RS02600 WP_019655528.1 559730..560272(+) (ssb) [Variovorax paradoxus strain 110B]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGPSDDDGYGGGGGYSQGGGGGGGGGYAPRAPAAAPRAPAPAP
RQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1007886 ABL839_RS02600 WP_019655528.1 559730..560272(+) (ssb) [Variovorax paradoxus strain 110B]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAGATGCGTACATTCCCGAGCGGCGACCA
GGTCGCGAACGTCACCGTGGCCACCACCGATCGCTGGAAGGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAATGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAGATCGCCGGCCAGTACCTGCGCAAGGGTTCGCAGGTCTATGTCGAGGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAGATCCGCGCCGACCAGATGCAGAT
GCTCGGCAGCCGCCAGGGCCAGGGCGGTCCGTCGGGTCCCAGCGACGACGACGGCTATGGCGGTGGCGGCGGCTACTCGC
AAGGCGGTGGTGGCGGCGGCGGTGGCGGCTACGCCCCGCGCGCACCCGCGGCCGCACCGCGCGCGCCCGCGCCGGCTCCG
CGCCAGGCACCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.039

100

0.533
  ssb Vibrio cholerae strain A1552

48.168

100

0.511
  ssb Neisseria gonorrhoeae MS11

46.629

98.889

0.461
  ssb Neisseria meningitidis MC58

45.506

98.889

0.45

Multiple sequence alignment