Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABL842_RS01885 | Genome accession | NZ_CP157630 |
| Coordinates | 410659..411213 (+) | Length | 184 a.a. |
| NCBI ID | WP_012745542.1 | Uniprot ID | - |
| Organism | Variovorax paradoxus strain 349MFTsu5.1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 405659..416213
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABL842_RS01875 (ABL842_01875) | - | 406411..407301 (-) | 891 | WP_418146578.1 | DMT family transporter | - |
| ABL842_RS01880 (ABL842_01880) | uvrA | 407353..410496 (-) | 3144 | WP_418146580.1 | excinuclease ABC subunit UvrA | - |
| ABL842_RS01885 (ABL842_01885) | ssb | 410659..411213 (+) | 555 | WP_012745542.1 | single-stranded DNA-binding protein | Machinery gene |
| ABL842_RS01890 (ABL842_01890) | - | 411272..413245 (+) | 1974 | WP_418146582.1 | sensor histidine kinase | - |
| ABL842_RS01895 (ABL842_01895) | - | 413258..413698 (-) | 441 | WP_307592981.1 | GFA family protein | - |
| ABL842_RS01900 (ABL842_01900) | - | 413717..414430 (-) | 714 | WP_369649685.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| ABL842_RS01905 (ABL842_01905) | - | 414786..415166 (+) | 381 | WP_012745546.1 | hypothetical protein | - |
| ABL842_RS01910 (ABL842_01910) | - | 415223..415516 (+) | 294 | WP_418146585.1 | hypothetical protein | - |
| ABL842_RS01915 (ABL842_01915) | - | 415528..416127 (+) | 600 | WP_012745548.1 | DUF6891 domain-containing protein | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 19381.31 Da Isoelectric Point: 5.9554
>NTDB_id=1007849 ABL842_RS01885 WP_012745542.1 410659..411213(+) (ssb) [Variovorax paradoxus strain 349MFTsu5.1]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGYSQGAGGGGGGGYAPRAPAAAPRAP
APAPRQAPAKSSSGFDDMDDDIPF
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGYSQGAGGGGGGGYAPRAPAAAPRAP
APAPRQAPAKSSSGFDDMDDDIPF
Nucleotide
Download Length: 555 bp
>NTDB_id=1007849 ABL842_RS01885 WP_012745542.1 410659..411213(+) (ssb) [Variovorax paradoxus strain 349MFTsu5.1]
ATGGCATCGGTCAACAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAAATGCGTACCTTCCCCAGCGGCGACCA
GGTCGCGAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAATACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAAGGCCAGGGCGGCCCCTCGGGCGGTCCCGAGGACGACGGCGGCTACTCACAGGGCGGCGGTGGCG
GCGGCTACTCGCAAGGCGCCGGTGGCGGTGGCGGTGGCGGCTATGCCCCCCGTGCACCGGCCGCGGCACCGCGCGCTCCG
GCGCCGGCACCGCGCCAGGCTCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTGA
ATGGCATCGGTCAACAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAAATGCGTACCTTCCCCAGCGGCGACCA
GGTCGCGAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAATACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAAGGCCAGGGCGGCCCCTCGGGCGGTCCCGAGGACGACGGCGGCTACTCACAGGGCGGCGGTGGCG
GCGGCTACTCGCAAGGCGCCGGTGGCGGTGGCGGTGGCGGCTATGCCCCCCGTGCACCGGCCGCGGCACCGCGCGCTCCG
GCGCCGGCACCGCGCCAGGCTCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
53.125 |
100 |
0.554 |
| ssb | Vibrio cholerae strain A1552 |
47.179 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
46.154 |
98.913 |
0.457 |
| ssb | Neisseria meningitidis MC58 |
44.505 |
98.913 |
0.44 |