Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABL837_RS01890 Genome accession   NZ_CP157626
Coordinates   412262..412816 (+) Length   184 a.a.
NCBI ID   WP_012745542.1    Uniprot ID   -
Organism   Variovorax paradoxus NBRC 15149     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 407262..417816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL837_RS01880 (ABL837_01880) - 408014..408904 (-) 891 WP_012745540.1 DMT family transporter -
  ABL837_RS01885 (ABL837_01885) uvrA 408956..412099 (-) 3144 WP_012745541.1 excinuclease ABC subunit UvrA -
  ABL837_RS01890 (ABL837_01890) ssb 412262..412816 (+) 555 WP_012745542.1 single-stranded DNA-binding protein Machinery gene
  ABL837_RS01895 (ABL837_01895) - 412875..414848 (+) 1974 WP_012745543.1 sensor histidine kinase -
  ABL837_RS01900 (ABL837_01900) - 414861..415301 (-) 441 WP_012745544.1 GFA family protein -
  ABL837_RS01905 (ABL837_01905) - 415320..416033 (-) 714 WP_062363767.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ABL837_RS01910 (ABL837_01910) - 416389..416769 (+) 381 WP_012745546.1 hypothetical protein -
  ABL837_RS01915 (ABL837_01915) - 416826..417119 (+) 294 WP_150106743.1 hypothetical protein -
  ABL837_RS01920 (ABL837_01920) - 417131..417730 (+) 600 WP_012745548.1 DUF6891 domain-containing protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19381.31 Da        Isoelectric Point: 5.9554

>NTDB_id=1007812 ABL837_RS01890 WP_012745542.1 412262..412816(+) (ssb) [Variovorax paradoxus NBRC 15149]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGYSQGAGGGGGGGYAPRAPAAAPRAP
APAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1007812 ABL837_RS01890 WP_012745542.1 412262..412816(+) (ssb) [Variovorax paradoxus NBRC 15149]
ATGGCATCGGTCAACAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAAATGCGTACCTTCCCGAGCGGCGACCA
GGTCGCGAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAGAAATACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGCCCCTCAGGCGGTCCCGAGGACGACGGCGGCTATTCGCAGGGCGGCGGTGGCG
GCGGCTACTCGCAAGGCGCCGGCGGTGGCGGTGGCGGCGGCTATGCCCCCCGCGCACCGGCCGCGGCACCGCGCGCTCCG
GCGCCGGCACCGCGCCAGGCTCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53.125

100

0.554
  ssb Vibrio cholerae strain A1552

47.179

100

0.5
  ssb Neisseria gonorrhoeae MS11

46.154

98.913

0.457
  ssb Neisseria meningitidis MC58

44.505

98.913

0.44

Multiple sequence alignment