Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABL838_RS02410 Genome accession   NZ_CP157624
Coordinates   547804..548343 (+) Length   179 a.a.
NCBI ID   WP_184640175.1    Uniprot ID   -
Organism   Variovorax sp. 160MFSha2.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 542804..553343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL838_RS02400 (ABL838_02400) uvrA 543171..546254 (-) 3084 WP_418123957.1 excinuclease ABC subunit UvrA -
  ABL838_RS02405 (ABL838_02405) - 546304..547695 (-) 1392 WP_418123958.1 chloride channel protein -
  ABL838_RS02410 (ABL838_02410) ssb 547804..548343 (+) 540 WP_184640175.1 single-stranded DNA-binding protein Machinery gene
  ABL838_RS02415 (ABL838_02415) - 548703..549356 (-) 654 WP_418123960.1 hypothetical protein -
  ABL838_RS02420 (ABL838_02420) - 549353..549724 (-) 372 WP_184640171.1 phage integrase family protein -
  ABL838_RS02425 (ABL838_02425) - 549997..550998 (+) 1002 WP_418118846.1 LysR family transcriptional regulator -
  ABL838_RS02430 (ABL838_02430) - 551157..552704 (+) 1548 WP_418123962.1 AMP-binding protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18996.92 Da        Isoelectric Point: 5.9505

>NTDB_id=1007794 ABL838_RS02410 WP_184640175.1 547804..548343(+) (ssb) [Variovorax sp. 160MFSha2.1]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGPSDDDGGYGGGGGYSQGGGGGGGYAPRAPAAAPRAPAPAPR
QAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1007794 ABL838_RS02410 WP_184640175.1 547804..548343(+) (ssb) [Variovorax sp. 160MFSha2.1]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAGATGCGTACATTCCCGAGCGGCGACCA
GGTCGCGAACGTCACAGTGGCCACCACCGATCGCTGGAAGGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTCGGCAGCCGCCAGGGCCAGGGCGGCCCGTCGGGTCCCAGCGATGACGACGGCGGCTACGGCGGTGGCGGCGGCTACT
CGCAAGGCGGCGGTGGTGGTGGCGGCTACGCCCCGCGCGCACCCGCGGCCGCACCGCGCGCTCCGGCGCCGGCTCCGCGC
CAGGCACCGGCCAAGTCGTCGTCGGGCTTCGATGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.632

100

0.559
  ssb Vibrio cholerae strain A1552

48.108

100

0.497
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464
  ssb Neisseria meningitidis MC58

45.506

99.441

0.453

Multiple sequence alignment