Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABL843_RS02435 Genome accession   NZ_CP157620
Coordinates   552805..553344 (+) Length   179 a.a.
NCBI ID   WP_126022297.1    Uniprot ID   A0A433MJT5
Organism   Variovorax sp. 350MFTsu5.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 547805..558344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL843_RS02425 (ABL843_02425) uvrA 548172..551255 (-) 3084 WP_418118843.1 excinuclease ABC subunit UvrA -
  ABL843_RS02430 (ABL843_02430) - 551305..552696 (-) 1392 WP_418118844.1 chloride channel protein -
  ABL843_RS02435 (ABL843_02435) ssb 552805..553344 (+) 540 WP_126022297.1 single-stranded DNA-binding protein Machinery gene
  ABL843_RS02440 (ABL843_02440) - 553704..554357 (-) 654 WP_418118845.1 hypothetical protein -
  ABL843_RS02445 (ABL843_02445) - 554354..554725 (-) 372 WP_184640171.1 phage integrase family protein -
  ABL843_RS02450 (ABL843_02450) - 554998..555999 (+) 1002 WP_418118846.1 LysR family transcriptional regulator -
  ABL843_RS02455 (ABL843_02455) - 556224..557705 (+) 1482 WP_418120430.1 AMP-binding protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18996.92 Da        Isoelectric Point: 5.9505

>NTDB_id=1007756 ABL843_RS02435 WP_126022297.1 552805..553344(+) (ssb) [Variovorax sp. 350MFTsu5.1]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGPSDDDGYGGGGGYSQGGGGGGGGYAPRAPAAAPRAPAPAPR
QAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1007756 ABL843_RS02435 WP_126022297.1 552805..553344(+) (ssb) [Variovorax sp. 350MFTsu5.1]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAGATGCGTACATTCCCGAGCGGCGACCA
GGTCGCGAACGTCACAGTGGCCACCACCGATCGCTGGAAGGACAAGCAAAGCGGCGAAATGCGCGAAGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAGATCCGCGCCGACCAGATGCAGAT
GCTCGGCAGCCGCCAGGGCCAGGGCGGCCCGTCGGGTCCCAGCGACGACGACGGCTACGGCGGTGGCGGCGGCTACTCGC
AAGGCGGCGGTGGTGGTGGTGGCGGCTACGCCCCGCGCGCACCCGCGGCCGCACCGCGCGCTCCGGCGCCGGCTCCGCGC
CAGGCACCGGCCAAGTCGTCGTCGGGCTTCGATGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433MJT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.832

100

0.553
  ssb Vibrio cholerae strain A1552

48.421

100

0.514
  ssb Neisseria gonorrhoeae MS11

46.893

98.883

0.464
  ssb Neisseria meningitidis MC58

45.763

98.883

0.453

Multiple sequence alignment