Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABL847_RS16765 Genome accession   NZ_CP157616
Coordinates   3660968..3661489 (-) Length   173 a.a.
NCBI ID   WP_076999510.1    Uniprot ID   -
Organism   Variovorax sp. KK3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3655968..3666489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL847_RS16745 (ABL847_16720) - 3656026..3656454 (+) 429 WP_076999524.1 hypothetical protein -
  ABL847_RS16750 (ABL847_16725) - 3656570..3657589 (+) 1020 WP_076999507.1 ABC transporter substrate-binding protein -
  ABL847_RS16755 (ABL847_16730) - 3657609..3659834 (+) 2226 WP_076999508.1 ABC transporter permease -
  ABL847_RS16760 (ABL847_16735) - 3659851..3660912 (+) 1062 WP_076999509.1 ABC transporter ATP-binding protein -
  ABL847_RS16765 (ABL847_16740) ssb 3660968..3661489 (-) 522 WP_076999510.1 single-stranded DNA-binding protein Machinery gene
  ABL847_RS16770 (ABL847_16745) - 3661529..3662482 (+) 954 WP_256856559.1 helix-turn-helix domain-containing protein -
  ABL847_RS16775 (ABL847_16750) - 3662595..3663404 (+) 810 WP_076999512.1 NAD(P)H-dependent oxidoreductase -
  ABL847_RS16780 (ABL847_16755) - 3663446..3664627 (+) 1182 WP_076999513.1 NAD(P)/FAD-dependent oxidoreductase -
  ABL847_RS16785 (ABL847_16760) - 3664640..3665413 (+) 774 WP_076999514.1 SDR family NAD(P)-dependent oxidoreductase -
  ABL847_RS16790 (ABL847_16765) - 3665417..3665869 (+) 453 WP_076999515.1 VOC family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18491.43 Da        Isoelectric Point: 5.9426

>NTDB_id=1007723 ABL847_RS16765 WP_076999510.1 3660968..3661489(-) (ssb) [Variovorax sp. KK3]
MASVNKVILVGNLGRDPETRTFPSGDQVCNVTIATTDKWKDKQSGEMREATEWHRLVFNGRLAEIAAQYLRKGSQIYVEG
QIRTRKYTDKDGVEKYATDIRVDQMQMLGSRQGQGAPSGDDDGGYGGGGYGGGGGGGYSRAPAAAPRAPAPAPRQAPAKS
SSGFDDMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1007723 ABL847_RS16765 WP_076999510.1 3660968..3661489(-) (ssb) [Variovorax sp. KK3]
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGCAACCTCGGCCGCGATCCCGAAACCCGTACCTTCCCGAGCGGCGACCA
GGTGTGCAACGTGACCATCGCCACCACCGACAAGTGGAAGGACAAGCAAAGCGGCGAGATGCGCGAGGCCACCGAATGGC
ACCGCCTGGTGTTCAACGGCCGCCTGGCCGAGATCGCCGCGCAGTACCTGCGCAAGGGCTCGCAGATCTACGTCGAAGGC
CAGATCCGCACGCGCAAGTACACCGACAAGGATGGCGTCGAAAAGTACGCGACCGACATCCGTGTCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGCACCGTCGGGTGACGACGACGGCGGCTACGGTGGTGGTGGCTACGGCGGTGGCG
GCGGCGGCGGTTACTCGCGCGCGCCGGCCGCGGCGCCGCGCGCACCGGCGCCGGCACCGCGCCAGGCACCGGCCAAGTCC
TCGTCGGGCTTCGACGACATGGACGACGACATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.078

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.491
  ssb Vibrio cholerae strain A1552

46.196

100

0.491
  ssb Neisseria meningitidis MC58

47.458

100

0.486

Multiple sequence alignment