Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABL848_RS13820 Genome accession   NZ_CP157611
Coordinates   2936827..2937378 (+) Length   183 a.a.
NCBI ID   WP_093301447.1    Uniprot ID   -
Organism   Variovorax sp. NFACC28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2931827..2942378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL848_RS13810 (ABL848_13790) uvrA 2932180..2935296 (-) 3117 WP_093301443.1 excinuclease ABC subunit UvrA -
  ABL848_RS13815 (ABL848_13795) - 2935315..2936718 (-) 1404 WP_093301445.1 chloride channel protein -
  ABL848_RS13820 (ABL848_13800) ssb 2936827..2937378 (+) 552 WP_093301447.1 single-stranded DNA-binding protein Machinery gene
  ABL848_RS13825 (ABL848_13805) pcaD 2937465..2938301 (-) 837 WP_093301449.1 3-oxoadipate enol-lactonase -
  ABL848_RS13830 (ABL848_13810) - 2938405..2939382 (+) 978 WP_093301450.1 LysR family transcriptional regulator -
  ABL848_RS13835 (ABL848_13815) - 2939379..2940086 (+) 708 WP_418116180.1 hypothetical protein -
  ABL848_RS13840 (ABL848_13820) - 2940093..2941064 (-) 972 WP_176947457.1 LysR family transcriptional regulator -
  ABL848_RS13845 (ABL848_13825) - 2941139..2941696 (+) 558 WP_093301455.1 hypothetical protein -
  ABL848_RS13850 (ABL848_13830) - 2941687..2942103 (+) 417 WP_093301457.1 VOC family protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19225.12 Da        Isoelectric Point: 5.9505

>NTDB_id=1007676 ABL848_RS13820 WP_093301447.1 2936827..2937378(+) (ssb) [Variovorax sp. NFACC28]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGPSDDDGYGGGGGGGYSQGGGGGGGGGGYAPRAPAAAPRAPA
PAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1007676 ABL848_RS13820 WP_093301447.1 2936827..2937378(+) (ssb) [Variovorax sp. NFACC28]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAATCTGGGGCGCGACCCCGAGATGCGTACATTCCCGAGCGGCGACCA
GGTCGCGAACGTCACAGTGGCCACCACCGATCGCTGGAAGGACAAGCAAAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCATCGTCTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATGTCGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAGATCCGCGCCGATCAGATGCAGAT
GCTCGGCAGCCGCCAGGGCCAGGGCGGCCCGTCGGGCCCGAGCGATGACGACGGCTACGGCGGTGGCGGTGGCGGCGGCT
ACTCGCAAGGCGGCGGTGGTGGTGGCGGCGGTGGCGGCTATGCCCCGCGTGCGCCCGCGGCTGCACCGCGCGCTCCGGCG
CCGGCTCCGCGCCAGGCACCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.777

100

0.536
  ssb Vibrio cholerae strain A1552

47.423

100

0.503
  ssb Neisseria gonorrhoeae MS11

45.856

98.907

0.454
  ssb Neisseria meningitidis MC58

44.199

98.907

0.437

Multiple sequence alignment