Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABLV33_RS16870 Genome accession   NZ_CP157605
Coordinates   3877622..3878680 (-) Length   352 a.a.
NCBI ID   WP_005911892.1    Uniprot ID   A0AAX0HYN4
Organism   Xanthomonas citri pv. malvacearum strain Xcm TX4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3853114..3898485 3877622..3878680 within 0


Gene organization within MGE regions


Location: 3853114..3898485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLV33_RS16770 (ABLV33_16745) - 3853659..3854588 (+) 930 WP_005917510.1 L,D-transpeptidase -
  ABLV33_RS16775 (ABLV33_16750) - 3854591..3855310 (+) 720 WP_005917514.1 M23 family metallopeptidase -
  ABLV33_RS16780 (ABLV33_16755) - 3855478..3855963 (-) 486 WP_005917516.1 hypothetical protein -
  ABLV33_RS16785 (ABLV33_16760) - 3856342..3857430 (-) 1089 Protein_3278 IS3-like element ISXac2 family transposase -
  ABLV33_RS16790 (ABLV33_16765) fhuE 3857633..3859819 (-) 2187 WP_033481499.1 ferric-rhodotorulic acid/ferric-coprogen receptor FhuE -
  ABLV33_RS16795 (ABLV33_16770) - 3860216..3860797 (+) 582 WP_223300980.1 alpha/beta fold hydrolase -
  ABLV33_RS16800 (ABLV33_16775) - 3860767..3861207 (+) 441 WP_033481503.1 hypothetical protein -
  ABLV33_RS16805 (ABLV33_16780) tkt 3861314..3863314 (-) 2001 WP_005911864.1 transketolase -
  ABLV33_RS16810 (ABLV33_16785) - 3863554..3864834 (-) 1281 WP_080598280.1 dicarboxylate/amino acid:cation symporter -
  ABLV33_RS16815 (ABLV33_16790) - 3865718..3867466 (-) 1749 WP_005911868.1 BatD family protein -
  ABLV33_RS16820 (ABLV33_16795) - 3867463..3869268 (-) 1806 WP_005911869.1 VWA domain-containing protein -
  ABLV33_RS16825 (ABLV33_16800) - 3869265..3870272 (-) 1008 WP_005911871.1 VWA domain-containing protein -
  ABLV33_RS16830 (ABLV33_16805) - 3870269..3870730 (-) 462 WP_005911873.1 DUF4381 family protein -
  ABLV33_RS16835 (ABLV33_16810) - 3870733..3871695 (-) 963 WP_033481505.1 DUF58 domain-containing protein -
  ABLV33_RS16840 (ABLV33_16815) - 3871716..3872735 (-) 1020 WP_005911878.1 MoxR family ATPase -
  ABLV33_RS16845 (ABLV33_16820) - 3872889..3873665 (-) 777 WP_078566289.1 hypothetical protein -
  ABLV33_RS16850 (ABLV33_16825) - 3873727..3875628 (-) 1902 WP_005911884.1 type IV pilus secretin PilQ family protein -
  ABLV33_RS16855 (ABLV33_16830) - 3875648..3876181 (-) 534 WP_003486179.1 pilus assembly protein PilP -
  ABLV33_RS16860 (ABLV33_16835) - 3876178..3876843 (-) 666 WP_003486177.1 type 4a pilus biogenesis protein PilO -
  ABLV33_RS16865 (ABLV33_16840) - 3876840..3877622 (-) 783 WP_005911890.1 PilN domain-containing protein -
  ABLV33_RS16870 (ABLV33_16845) comM 3877622..3878680 (-) 1059 WP_005911892.1 pilus assembly protein PilM Machinery gene
  ABLV33_RS16875 (ABLV33_16850) - 3878797..3881319 (+) 2523 WP_078566290.1 penicillin-binding protein 1A -
  ABLV33_RS16880 (ABLV33_16855) - 3881658..3882308 (+) 651 WP_005911897.1 hypothetical protein -
  ABLV33_RS16885 (ABLV33_16860) - 3882569..3883858 (-) 1290 WP_003486167.1 citrate synthase -
  ABLV33_RS16890 (ABLV33_16865) - 3884088..3884330 (-) 243 WP_005911911.1 type B 50S ribosomal protein L31 -
  ABLV33_RS16895 (ABLV33_16870) - 3884402..3885358 (-) 957 WP_005911913.1 nucleoside hydrolase -
  ABLV33_RS16900 (ABLV33_16875) recG 3885469..3887622 (-) 2154 WP_003486161.1 ATP-dependent DNA helicase RecG -
  ABLV33_RS16905 (ABLV33_16880) - 3887643..3888023 (-) 381 WP_005911914.1 RidA family protein -
  ABLV33_RS16910 (ABLV33_16885) - 3888103..3890274 (-) 2172 WP_003486157.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABLV33_RS16915 (ABLV33_16890) rpoZ 3890403..3890702 (-) 300 WP_002812428.1 DNA-directed RNA polymerase subunit omega -
  ABLV33_RS16920 (ABLV33_16895) gmk 3890963..3891574 (-) 612 WP_005911919.1 guanylate kinase -
  ABLV33_RS16925 (ABLV33_16900) - 3891690..3892550 (-) 861 WP_005911920.1 YicC/YloC family endoribonuclease -
  ABLV33_RS16930 (ABLV33_16905) rph 3892660..3893385 (+) 726 WP_005911922.1 ribonuclease PH -
  ABLV33_RS16935 (ABLV33_16910) - 3893382..3893774 (+) 393 WP_005911924.1 VOC family protein -
  ABLV33_RS16940 (ABLV33_16915) rdgB 3893771..3894370 (+) 600 WP_003486138.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  ABLV33_RS16945 (ABLV33_16920) hemW 3894386..3895543 (+) 1158 WP_005911926.1 radical SAM family heme chaperone HemW -
  ABLV33_RS16950 (ABLV33_16925) - 3895847..3898270 (+) 2424 WP_033479597.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37579.19 Da        Isoelectric Point: 4.3924

>NTDB_id=1007646 ABLV33_RS16870 WP_005911892.1 3877622..3878680(-) (comM) [Xanthomonas citri pv. malvacearum strain Xcm TX4]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGSRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1007646 ABLV33_RS16870 WP_005911892.1 3877622..3878680(-) (comM) [Xanthomonas citri pv. malvacearum strain Xcm TX4]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCGACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAGCCGTTTCCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCC
GTGGCAGGGTCGGCGGTGATCACCAAGTTGATTCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAATA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGACCGCCAAGGTAATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
AGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGGCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACTGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAAGTGTTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGTGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGTGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCACTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment