Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABFG95_RS14225 Genome accession   NZ_CP157584
Coordinates   3064524..3065045 (-) Length   173 a.a.
NCBI ID   WP_026382027.1    Uniprot ID   A0A6S7E5D3
Organism   Achromobacter sp. HNDS-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3059524..3070045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFG95_RS14195 (ABFG95_14195) - 3059692..3060309 (+) 618 WP_049078203.1 TetR/AcrR family transcriptional regulator -
  ABFG95_RS14200 (ABFG95_14200) - 3060618..3061475 (+) 858 WP_068950499.1 cysteine hydrolase -
  ABFG95_RS14205 (ABFG95_14205) - 3061607..3062197 (-) 591 WP_049077196.1 TetR/AcrR family transcriptional regulator -
  ABFG95_RS14210 (ABFG95_14210) - 3062329..3062634 (-) 306 WP_049077199.1 DUF4148 domain-containing protein -
  ABFG95_RS14215 (ABFG95_14215) - 3062712..3063017 (-) 306 WP_049077201.1 DUF4148 domain-containing protein -
  ABFG95_RS14220 (ABFG95_14220) - 3063267..3063995 (-) 729 WP_348996025.1 class I SAM-dependent methyltransferase -
  ABFG95_RS14225 (ABFG95_14225) ssb 3064524..3065045 (-) 522 WP_026382027.1 single-stranded DNA-binding protein Machinery gene
  ABFG95_RS14230 (ABFG95_14230) - 3065328..3066512 (-) 1185 WP_054419625.1 MFS transporter -
  ABFG95_RS14235 (ABFG95_14235) uvrA 3066640..3069501 (+) 2862 WP_348996049.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18656.68 Da        Isoelectric Point: 5.9656

>NTDB_id=1007541 ABFG95_RS14225 WP_026382027.1 3064524..3065045(-) (ssb) [Achromobacter sp. HNDS-1]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPARQPQQRAPAQRPAPQQRPAPQAAPAGG
GANLADMDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1007541 ABFG95_RS14225 WP_026382027.1 3064524..3065045(-) (ssb) [Achromobacter sp. HNDS-1]
ATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCCGC
AATCTGCAACATGTCCATCGCCACCACCTCCACCTGGAAGGACAAGGCCTCGGGCGAACGCCGCGAAGAAACCGAATGGC
ACCGCGTGGTCATGTACAACCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGAAGGC
CGTCTGAAGACCCGCAAGTGGCAGGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTCGCCGACCAGATGCA
GATGCTGGGTGGCCGCGAAGACGGCGGCGGCGGTGGCGGCAGCTACGGTGGCGGCGGCGGTTACGACGACGCCCCGGCGC
GCCAGCCGCAGCAGCGCGCCCCGGCCCAGCGTCCGGCGCCGCAACAGCGTCCCGCGCCCCAGGCCGCGCCCGCGGGCGGC
GGCGCCAACCTGGCCGATATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S7E5D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.645

100

0.578
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.549
  ssb Neisseria gonorrhoeae MS11

53.143

100

0.538
  ssb Neisseria meningitidis MC58

52.571

100

0.532

Multiple sequence alignment