Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PERCYII40_RS09510 Genome accession   NZ_LR739071
Coordinates   2023998..2024327 (+) Length   109 a.a.
NCBI ID   WP_162288650.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain C7-25 isolate C7-25     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2018998..2029327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PERCYII40_RS09495 (PACF725_1899) - 2019613..2020575 (+) 963 WP_016253165.1 UDP-glucose 4-epimerase family protein -
  PERCYII40_RS09500 (PACF725_1900) - 2020575..2021612 (+) 1038 WP_003452706.1 MraY family glycosyltransferase -
  PERCYII40_RS09505 (PACF725_1901) - 2021810..2023807 (+) 1998 WP_003122257.1 polysaccharide biosynthesis protein -
  PERCYII40_RS09510 (PACF725_1902) comEA/comE1 2023998..2024327 (+) 330 WP_162288650.1 ComEA family DNA-binding protein Machinery gene
  PERCYII40_RS09520 (PACF725_1904) - 2024544..2025740 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  PERCYII40_RS09525 (PACF725_1905) uvrB 2025928..2027940 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11379.36 Da        Isoelectric Point: 8.0459

>NTDB_id=1007426 PERCYII40_RS09510 WP_162288650.1 2023998..2024327(+) (comEA/comE1) [Pseudomonas aeruginosa strain C7-25 isolate C7-25]
MHLIKSALLLILFACLPFSASAAPVAVVKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=1007426 PERCYII40_RS09510 WP_162288650.1 2023998..2024327(+) (comEA/comE1) [Pseudomonas aeruginosa strain C7-25 isolate C7-25]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGTCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment