Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABLN21_RS06855 Genome accession   NZ_CP157574
Coordinates   1486449..1486949 (+) Length   166 a.a.
NCBI ID   WP_005719438.1    Uniprot ID   A0A9X3URY5
Organism   Pasteurella multocida strain strain 90     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1481449..1491949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLN21_RS06840 (ABLN21_06840) rlmB 1481992..1482729 (+) 738 WP_005737312.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABLN21_RS06845 (ABLN21_06845) sodC 1482815..1483375 (-) 561 WP_005737310.1 superoxide dismutase family protein -
  ABLN21_RS06850 (ABLN21_06850) uvrA 1483446..1486277 (-) 2832 WP_010907420.1 excinuclease ABC subunit UvrA -
  ABLN21_RS06855 (ABLN21_06855) ssb 1486449..1486949 (+) 501 WP_005719438.1 single-stranded DNA-binding protein Machinery gene
  ABLN21_RS06860 (ABLN21_06860) qatD 1487809..1488540 (-) 732 WP_083008049.1 Qat anti-phage system TatD family nuclease QatD -
  ABLN21_RS06865 (ABLN21_06865) qatC 1488537..1489868 (-) 1332 WP_005752668.1 Qat anti-phage system QueC-like protein QatC -
  ABLN21_RS06870 (ABLN21_06870) - 1489853..1490593 (-) 741 WP_005752670.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18673.68 Da        Isoelectric Point: 5.3353

>NTDB_id=1007411 ABLN21_RS06855 WP_005719438.1 1486449..1486949(+) (ssb) [Pasteurella multocida strain strain 90]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTASPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1007411 ABLN21_RS06855 WP_005719438.1 1486449..1486949(+) (ssb) [Pasteurella multocida strain strain 90]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGTCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAGGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGACCGCTACACTACCGAGATCCAAGGCGACGTGTTGCAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTATGCCCCACAAACCGCTTCGCCACAATATAATGCCCCAACAG
GTGGCTACGGCGCGCAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47

Multiple sequence alignment