Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   GPW69_RS02105 Genome accession   NZ_LR738724
Coordinates   407382..408047 (+) Length   221 a.a.
NCBI ID   WP_074391010.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402382..413047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS02080 - 402593..403993 (+) 1401 WP_024377222.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  GPW69_RS02085 - 403995..404366 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  GPW69_RS02090 cysK 404392..405318 (-) 927 WP_002937015.1 cysteine synthase A -
  GPW69_RS02095 - 405408..406040 (-) 633 WP_044769501.1 YigZ family protein -
  GPW69_RS02100 comFA/cflA 406097..407389 (+) 1293 WP_074391009.1 DEAD/DEAH box helicase Machinery gene
  GPW69_RS02105 comFC/cflB 407382..408047 (+) 666 WP_074391010.1 ComF family protein Machinery gene
  GPW69_RS02110 hpf 408125..408667 (+) 543 WP_014637536.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25764.60 Da        Isoelectric Point: 8.2726

>NTDB_id=1007135 GPW69_RS02105 WP_074391010.1 407382..408047(+) (comFC/cflB) [Streptococcus suis isolate 9401240]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGTCEECFLTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKIVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTVVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1007135 GPW69_RS02105 WP_074391010.1 407382..408047(+) (comFC/cflB) [Streptococcus suis isolate 9401240]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCACCTGTGAAGAATGTTTTTTGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAAATAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAGTTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGTGGGTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCG
TCTAAAAATCGAGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATACACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae Rx1

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae D39

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae R6

48.624

98.643

0.48
  comFC/cflB Streptococcus pneumoniae TIGR4

48.624

98.643

0.48
  comFC/cflB Streptococcus mitis NCTC 12261

48.624

98.643

0.48

Multiple sequence alignment