Detailed information NTG1007107

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: GPW69_RS00350
• Genome accession: NZ_LR738724
• Coordinates: 55957..56955 (+)
• Length: 332 a.a.
• NCBI ID: WP_029172061.1
• Uniprot ID: -
• Organism: Streptococcus suis isolate 9401240
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 50957..61955

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPW69_RS10620	-	52428..52601 (+)	174	WP_171841446.1	hypothetical protein	-
GPW69_RS00330	-	52879..53748 (-)	870	WP_074391033.1	cysteine ABC transporter substrate-binding protein	-
GPW69_RS00335	-	53761..54507 (-)	747	WP_074391034.1	amino acid ABC transporter ATP-binding protein	-
GPW69_RS00340	-	54512..55189 (-)	678	WP_074391035.1	amino acid ABC transporter permease	-
GPW69_RS00345	-	55170..55829 (-)	660	WP_074391045.1	amino acid ABC transporter permease	-
GPW69_RS00350	ruvB	55957..56955 (+)	999	WP_029172061.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
GPW69_RS00355	-	56955..57701 (+)	747	WP_074391036.1	GNAT family N-acetyltransferase	-
GPW69_RS00360	-	57703..58326 (+)	624	WP_074391037.1	HAD-IA family hydrolase	-
GPW69_RS00365	comR	58431..59330 (+)	900	WP_074391038.1	helix-turn-helix domain-containing protein	Regulator
GPW69_RS00370	-	59538..60758 (+)	1221	WP_074391039.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37499.02 Da
• Isoelectric Point: 4.4708

>NTDB_id=1007107 GPW69_RS00350 WP_029172061.1 55957..56955(+) (ruvB) [Streptococcus suis isolate 9401240]
MSRILDMEQMQDEEYVERTLRPQKLNEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVNI
KQTSGPVIEKAGDLVALLNDLEPGDVLFIDEIHRMPMAVEEILYSAMEDFYIDIMIGAGEASRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYELADLTEIVERTADIFEMEITHEAAIELARRSRGTPRIANRLLKRVRDFAQIMGDGLID
DSITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLNTLSVNIAEERETVEDMYEPYLIQQGFLMRTRTGRVATAK
AYEHLGYPYTEK

Nucleotide

• Length: 999 bp

>NTDB_id=1007107 GPW69_RS00350 WP_029172061.1 55957..56955(+) (ruvB) [Streptococcus suis isolate 9401240]
ATGAGTAGAATATTAGATATGGAACAAATGCAGGACGAGGAATACGTTGAGCGTACCCTGCGTCCCCAGAAATTAAATGA
ATACATCGGTCAGGACAAGGTCAAGGACCAGCTGAAAATCTTTATCGAGGCAGCCAAGCTCCGTGACGAAGCCTTGGACC
ATACTCTTCTTTTTGGTCCTCCAGGTCTGGGTAAGACCACCATGGCCTTTGTCATTGCCAACGAACTAGGCGTCAATATC
AAGCAGACCAGTGGTCCCGTCATTGAAAAGGCAGGCGATTTAGTGGCCCTTCTCAACGATTTGGAGCCAGGCGATGTCCT
CTTTATCGATGAAATCCACCGTATGCCCATGGCGGTCGAGGAAATTCTCTACTCTGCTATGGAAGATTTTTACATTGACA
TCATGATTGGGGCTGGGGAGGCCAGTCGCTCTGTGCATCTGGAGTTGCCTCCTTTTACCCTGATTGGAGCAACCACTCGT
GCGGGGATGCTGTCCAATCCCCTGCGGGCTCGTTTTGGTATCACCGGTCACATGGAGTATTATGAACTGGCTGATTTGAC
CGAGATTGTCGAGCGGACAGCGGATATCTTTGAGATGGAGATTACCCATGAAGCAGCGATTGAGCTGGCTCGTCGTTCGC
GGGGGACCCCTCGTATCGCCAACCGCCTGCTCAAGCGAGTGCGGGATTTTGCACAGATTATGGGTGACGGCCTGATTGAC
GATAGCATTACGGACAAGGCCCTGACCATGCTAGACGTGGACCGAGAGGGGCTGGACTATGTGGACCAGAAGATTCTTCG
TACAATGATTGAGATGTACGGCGGCGGTCCTGTCGGCCTCAACACCCTGTCGGTCAATATCGCCGAGGAGCGTGAAACAG
TGGAGGATATGTACGAGCCTTACCTGATTCAGCAGGGCTTCCTCATGCGGACACGGACAGGGCGGGTTGCGACAGCCAAG
GCCTACGAGCACTTGGGTTATCCCTATACGGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.964	100	0.91
ruvB	Streptococcus pneumoniae R6	90.663	100	0.907
ruvB	Streptococcus pneumoniae D39	90.663	100	0.907
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.133	97.289	0.575
ruvB	Helicobacter pylori 26695	51.227	98.193	0.503
ruvB	Synechocystis sp. PCC 6803	50.479	94.277	0.476