Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   STREPSUIS_RS04760 Genome accession   NZ_LR738722
Coordinates   931581..935231 (+) Length   1216 a.a.
NCBI ID   WP_171840855.1    Uniprot ID   -
Organism   Streptococcus suis isolate 861160     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 926581..940231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STREPSUIS_RS04750 - 928044..928208 (+) 165 WP_074389984.1 hypothetical protein -
  STREPSUIS_RS04755 rexB 928315..931581 (+) 3267 WP_074389985.1 ATP-dependent nuclease subunit B Machinery gene
  STREPSUIS_RS04760 rexA 931581..935231 (+) 3651 WP_171840855.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  STREPSUIS_RS04765 plsY 935353..935997 (-) 645 WP_024385652.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  STREPSUIS_RS04770 parE 936140..938083 (+) 1944 WP_074389987.1 DNA topoisomerase IV subunit B -
  STREPSUIS_RS04775 - 938113..938925 (+) 813 WP_011922289.1 hypothetical protein -
  STREPSUIS_RS04780 fic 939106..939712 (+) 607 Protein_884 protein adenylyltransferase Fic -

Sequence

Protein


Download         Length: 1216 a.a.        Molecular weight: 139569.85 Da        Isoelectric Point: 5.0292

>NTDB_id=1006952 STREPSUIS_RS04760 WP_171840855.1 931581..935231(+) (rexA) [Streptococcus suis isolate 861160]
MAFEQFLSAEEIKAVQLAEVNSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFT
VKAAGELKERIEKNLNETIAETTDMDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEQDENGEFRKLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIEQILEQG
FKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQADLMERVEKVLLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQLISGLRDLGQEVYELTLLKDYQVQALPLLVLLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANPQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKHEMEYLIYDQQDSANSSTDAEEETP
LTAGEIEVVAKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVIIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMEIAQQTNGQHPELMSGELKKKIKDFLSILENWRAFAKLHSIYD
MIWKMFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESVATFQDWILAIDEAFSGEDLRFKKVFVTDEDLTE
EKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPILEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVRAALEAVHAEQAIKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASLQTDSLSQEQFVLRGIIDGYLLYDNHIVLFDYKTDKYDQPIQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVEVNI

Nucleotide


Download         Length: 3651 bp        

>NTDB_id=1006952 STREPSUIS_RS04760 WP_171840855.1 931581..935231(+) (rexA) [Streptococcus suis isolate 861160]
ATGGCTTTTGAACAATTTTTAAGCGCGGAAGAAATCAAGGCTGTGCAGCTGGCGGAAGTCAATTCTGATAAGCAACAAAA
ACGCACACCTGAGCAGATTGAAGCCATCTACACGCACGGTCAGAATGTTCTGGTCTCTGCATCGGCTGGGTCAGGTAAGA
CCTTCGTTATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGTGTCGGGATTGACCAGCTCTTTATCTCTACCTTTACA
GTCAAGGCGGCTGGTGAGTTGAAGGAGCGGATCGAGAAAAATCTCAATGAAACCATTGCGGAGACGACGGATATGGACTT
GCGTCGGCATTTGTCTGCCCAGTTGGCGGATTTGACCAAGGCAGACATTGGGACCATGGACTCCTTTACGCAGAAATTGG
TGACAACCTACGGTTATAGCCTTGGTATTTCTCCGCAGTTTCGGATTTTACAGGATGAGACTGAAAAAGCAAGTCTAAAA
AAAGAGGTTTTTGACCAGCTCTTTGCAGATTATCTTGAACAGGATGAAAATGGAGAGTTCCGCAAACTGGTTCGCAATTT
TTCGGGCAACCGCAAGGATAATAGTGGTTTCCGTCAGGTTGTTTATCAGGTGCATGATTTTAGCCAATCGACCAGCAGTC
CAACTAAATGGCTGAAAGAGCAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATAGAGCAAATCTTAGAGCAAGGC
TTTAAGGAAAAAGTATTAGACAAGCTCTATCAAGCTGCAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGATCTGCCAAGTATTTTGCAAATGTGGAAGAAGTCTTGGATTTGCTGACAGGTTTAGATAGTCTGGACCAGGCGGACT
TGATGGAGCGGGTTGAAAAAGTCCTTCTCATCAACGACCAGTCCAGAGGCAAGGGTTTGACCAATGCCAATCGACCAAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAGCCAGCTTATCTCAGGACTTAGAGATTTGGGTCA
AGAAGTTTATGAATTAACCCTGCTGAAAGATTATCAGGTTCAAGCTTTGCCACTGCTCGTATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCTTTTGAATTTGGCGATATTGGGCATTTCGCTATT
CGTATTTTAGAAGAAAATGCGGACATTCGCCAGTTTTTCCAAGAGAAATATCACGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGAATGCTAGACCTGCTGTCTAACGGACACAACCGCTTTATGGTGGGCGATATTAAGCAGT
CCATCTATCGATTCCGTCAGGCGGATCCGATGATTTTCCAAGAGAAATTTGAACTGTATCAGGCAAATCCTCAGGCTGGG
AAATTGATTTTGCTTAAGGAAAATTTCCGTAGTCAGATTGAGGTCTTGGAGGCGACAAATGCTATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGAGAAATCAAGTATGACGACACCCACAGTCTAGTGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGC
CTAAGCATGAGATGGAATACTTGATTTACGACCAGCAGGATAGCGCAAACTCTTCAACGGATGCTGAGGAAGAAACACCT
CTGACTGCTGGTGAAATTGAGGTCGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGAGCAGACTTCAAGGACAT
CACTCTCTTGGTACAAAAGCGGACGCACAATGACCTCATTATGTCCATTTTTGAAAAACATGGCATTCCAATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATAATCATGCTGGATACCTTGCGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCCCTGCTTAAATCGCCTATGTTCCGATTCGATGAGGATGAGTTGACACGGATTTCCTTGCA
GGCTGGGACAGGTTTCTTTTACCAGAAAATGGAAATAGCCCAGCAAACAAATGGGCAACATCCTGAACTTATGTCAGGAG
AGTTGAAGAAGAAAATCAAGGATTTCTTGTCTATCTTAGAAAACTGGCGTGCTTTTGCCAAACTGCATTCTATTTATGAC
ATGATTTGGAAGATGTTCAATGAAAAATTCTACTATGACTATGTCGGTGCGCTTCCAAATGGCAGCAAGCGTCAGGCCAA
TCTATATGCACTAGGTCTGCGTGCCAACCAGTTTGAAAAAACAGGTTACAAGGGCTTGTCCCGCTTCATTGCCATGATTG
ACCGTGCCTTAGCAAATGATAAGGATTTGGCAGATGTACAAGAGTTTCTGCCGCAAAATGCTGTACAGCTTATGACCATC
CATAAGTCAAAAGGTTTGGAGTTTAAATATGTCTTCCTCATGAACATCGATAAGCGATTCAACTTGGAAGACCATTACCA
GTCAGTCATCATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAGCGGATATGAAAGATAAGGTAAATAGCCCATTGC
CTCAGGTGCGAGTCTTAATGAACACCCTCCCTTATCAAAATAATCTCCAAGAGCTAAAAATTGCCAATCTTTCAGAACAA
ATGCGGTTGCTCTATGTCGCACTAACGCGTGCCGAGAAGAAGCTGTATCTGGTTGGAAAGGGTAATGCTGACAAGTTAGC
TGAAAAATACGATGGCAAAAAGGAAAATGGCGTACTTGCCCAATCAACTCGTGAAAGCGTGGCGACCTTTCAAGACTGGA
TTCTAGCCATTGATGAGGCTTTTTCAGGAGAAGACTTGCGCTTCAAGAAAGTCTTTGTGACGGACGAGGATTTGACAGAG
GAGAAGATTGGCAAACTTACATTGAAGAGTAAGCTAGAAGACGCCAGCCTTAAAGATATTCGTCAATCAGAAGACATCGC
CCAGGCCTTGGACCAGTTGTCCTCTGTCCAAGAGTTGAACGAACGCTATAAGGCTGCTATAGAATTACCAAGTTTACGGA
CTCCAAGTCAAATCAAGAAGCTCTATGAGCCTATTTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCAAAA
CGGACCTTTAACTTGCCAGATTTTTCCAAGAAACCAAAAATCACTGGAGCCCAAGTCGGTTCAGCAGTGCATGAACTCAT
GCAACGCTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAGCAGCTCTAGAAGCTGTTCATGCTGAGCAAGCGA
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTTGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAT
AAACTTCATCGAGAAGCTCCATTTGCAAGTTTGCAGACAGATTCTTTGTCACAGGAACAATTTGTCCTTCGTGGGATTAT
CGATGGCTACCTACTGTATGATAATCATATTGTCCTCTTTGATTACAAGACAGACAAATATGACCAACCAATCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTATGCGGAGGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAGAATAGAAGTGGTCGAAGTCAACATATAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(483-897)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.922

100

0.522

Multiple sequence alignment