Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ABLB99_RS17485 Genome accession   NZ_CP157447
Coordinates   3671082..3672212 (+) Length   376 a.a.
NCBI ID   WP_006581713.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1727     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3666082..3677212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB99_RS17460 (ABLB99_17455) - 3666344..3666550 (-) 207 WP_002054207.1 DUF4199 domain-containing protein -
  ABLB99_RS17465 (ABLB99_17460) - 3666603..3668717 (-) 2115 WP_348925328.1 TonB-dependent copper receptor -
  ABLB99_RS17470 (ABLB99_17465) - 3668789..3669217 (-) 429 WP_002054220.1 DUF2946 family protein -
  ABLB99_RS17475 (ABLB99_17470) def 3669254..3669784 (-) 531 WP_002054252.1 peptide deformylase -
  ABLB99_RS17480 (ABLB99_17475) tsaP 3669907..3671061 (+) 1155 WP_006581712.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABLB99_RS17485 (ABLB99_17480) dprA 3671082..3672212 (+) 1131 WP_006581713.1 DNA-processing protein DprA Machinery gene
  ABLB99_RS17490 (ABLB99_17485) - 3672263..3672832 (+) 570 WP_024438146.1 L-threonylcarbamoyladenylate synthase -
  ABLB99_RS17495 (ABLB99_17490) - 3673225..3674145 (-) 921 WP_002054284.1 DMT family transporter -
  ABLB99_RS17500 (ABLB99_17495) - 3674251..3674904 (-) 654 WP_006581284.1 TetR/AcrR family transcriptional regulator -
  ABLB99_RS17505 (ABLB99_17500) - 3675039..3676253 (+) 1215 WP_004883889.1 MFS transporter -
  ABLB99_RS17510 (ABLB99_17505) - 3676275..3677039 (+) 765 WP_006581282.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41821.30 Da        Isoelectric Point: 6.4984

>NTDB_id=1006952 ABLB99_RS17485 WP_006581713.1 3671082..3672212(+) (dprA) [Acinetobacter nosocomialis strain XH1727]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGTCEKATQPDGLAKWSSLGLHANHLKRVNEFQTAQGQAQFEQLIQQV
QQHTDFILTPDDSGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQSQNEETNTNIPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVSVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1006952 ABLB99_RS17485 WP_006581713.1 3671082..3672212(+) (dprA) [Acinetobacter nosocomialis strain XH1727]
ATGCTCACCCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAGCACTCATTAGTTAGTTTTAA
AAAAATTATCGATTATTTTGGAACTTGTGAAAAAGCAACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTTTGGGGTTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGGCACAAGGCCAAGCTCAGTTCGAACAGCTTATACAACAAGTT
CAGCAGCATACTGATTTTATTTTGACGCCCGATGACTCTGGCTACCCTACTCAATTACTCCCTTATACAGATCATCCACC
TGTTATTTTTGGAAAAGGTCAGGCACAGGCATTATTGCAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGTCAGGTGGCTTATGATTTTGCCTACTACTTAAGTGAAAAGGGCTTTTTTATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCCGCTCATCAACGTACAATTGCAGTCACTGGTACGGGCCTAGACACTACCTA
TCCAGCTCAAAATAAAAAACTGGCAGAACATATTTTGGCTCAGAACGGCGCCATTATTACTGAGTTTTTACCTGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTTAGTGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGTGGCTCGCTCATCACGGCCAATAAAGCTGCTGAACAAGGCAAAACCGTATTCGCCATTCCGGGCCATATTTA
TAGTGAGTTCCATCAAGGATGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTTGATCATCCCGAACAAATTATTGAAG
ACCTCGCCTTACCAACTCAATGGCAAAGCCAGCAACAAAGTCAAAATGAAGAAACTAATACGAATATTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTTTC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

96.011

100

0.96

  dprA Acinetobacter baumannii D1279779

96.011

100

0.96

  dprA Acinetobacter baylyi ADP1

71.129

100

0.721

  dprA Vibrio cholerae strain A1552

43.505

88.032

0.383


Multiple sequence alignment