Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABLC01_RS00965 Genome accession   NZ_CP157442
Coordinates   215760..216347 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XH1728     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 210760..221347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC01_RS00940 (ABLC01_00940) - 211381..211734 (+) 354 WP_005066877.1 DUF1304 domain-containing protein -
  ABLC01_RS00945 (ABLC01_00945) glpM 211787..212128 (+) 342 WP_000263326.1 GlpM family protein -
  ABLC01_RS00950 (ABLC01_00950) tenA 212178..212852 (-) 675 WP_032070461.1 thiaminase II -
  ABLC01_RS00955 (ABLC01_00955) - 213115..214197 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  ABLC01_RS00960 (ABLC01_00960) yajR 214344..215708 (+) 1365 WP_005078603.1 MFS transporter -
  ABLC01_RS00965 (ABLC01_00965) ssb 215760..216347 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  ABLC01_RS00970 (ABLC01_00970) - 216388..216711 (-) 324 WP_032057180.1 AzlD domain-containing protein -
  ABLC01_RS00975 (ABLC01_00975) - 216708..217403 (-) 696 WP_005804464.1 AzlC family ABC transporter permease -
  ABLC01_RS00980 (ABLC01_00980) ydcN 217472..218020 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  ABLC01_RS00985 (ABLC01_00985) - 218326..219768 (+) 1443 WP_032057182.1 amino acid permease -
  ABLC01_RS00990 (ABLC01_00990) - 219834..221333 (-) 1500 WP_017399625.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=1006860 ABLC01_RS00965 WP_005066890.1 215760..216347(+) (ssb) [Acinetobacter pittii strain XH1728]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1006860 ABLC01_RS00965 WP_005066890.1 215760..216347(+) (ssb) [Acinetobacter pittii strain XH1728]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACGCGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCGCCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385

Multiple sequence alignment