Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABLB98_RS13280 Genome accession   NZ_CP157435
Coordinates   2771537..2772121 (-) Length   194 a.a.
NCBI ID   WP_005156773.1    Uniprot ID   A0A7Y8Q7D8
Organism   Acinetobacter sp. XH1639     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2766537..2777121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS13255 (ABLB98_13250) - 2766824..2767129 (+) 306 WP_152878255.1 transcriptional regulator -
  ABLB98_RS13265 (ABLB98_13260) - 2767832..2768659 (-) 828 WP_348882577.1 methyltransferase domain-containing protein -
  ABLB98_RS13270 (ABLB98_13265) - 2768662..2769960 (-) 1299 WP_005156769.1 FAD-dependent oxidoreductase -
  ABLB98_RS13275 (ABLB98_13270) - 2770397..2771257 (-) 861 WP_348882578.1 pirin family protein -
  ABLB98_RS13280 (ABLB98_13275) ssb 2771537..2772121 (-) 585 WP_005156773.1 single-stranded DNA-binding protein Machinery gene
  ABLB98_RS13285 (ABLB98_13280) - 2772173..2773537 (-) 1365 WP_034602552.1 MFS transporter -
  ABLB98_RS13290 (ABLB98_13285) - 2773689..2774771 (-) 1083 WP_348882579.1 DUF475 domain-containing protein -
  ABLB98_RS13295 (ABLB98_13290) tenA 2774943..2775617 (+) 675 WP_005156779.1 thiaminase II -
  ABLB98_RS13300 (ABLB98_13295) - 2775774..2776127 (-) 354 WP_348882580.1 DUF1304 domain-containing protein -
  ABLB98_RS13305 (ABLB98_13300) - 2776199..2776453 (-) 255 Protein_2570 NADPH:quinone oxidoreductase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21309.01 Da        Isoelectric Point: 6.4819

>NTDB_id=1006858 ABLB98_RS13280 WP_005156773.1 2771537..2772121(-) (ssb) [Acinetobacter sp. XH1639]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDTRQQSEQGGGDFNQPRFNNNNNQGGGYQNTGYNNNQNGYGQGGGFAGGNQG
NYAGSPQAGNGFNTPKSAPQPATAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=1006858 ABLB98_RS13280 WP_005156773.1 2771537..2772121(-) (ssb) [Acinetobacter sp. XH1639]
ATGCGTGGTGTGAATAAAGTTATTTTAGTAGGTACTTTGGGTAAAGATCCTGAAACCAAAACTTTCCCAAATGGTGGATC
CCTGACTCAATTTTCGATTGCAACAAGTGAGTCTTGGACAGATAAGAATACAGGCGAGCGTAAAGAACAAACAGAATGGC
ATCGTATTGTGTTACACAACCGTTTAGGCGAAATTGCACAGCAATATTTGCGTAAAGGTTCAAAAGTTTATATCGAAGGT
TCATTACGTACTCGTCAATGGACAGATCAAAACGGTCAAGAGCGTTACAGTACTGAAATTCGTGGCGATCAAATGCAAAT
GTTAGATACGCGTCAACAAAGCGAACAAGGCGGCGGTGACTTTAATCAACCACGTTTTAATAACAACAATAATCAAGGTG
GTGGTTACCAAAATACGGGTTATAACAACAACCAAAATGGTTATGGTCAGGGCGGAGGTTTTGCTGGCGGTAATCAAGGT
AATTATGCTGGTAGTCCACAAGCAGGAAATGGTTTTAATACACCAAAATCAGCACCTCAGCCTGCGACTGCCCCTGCTGA
TTTAGATGATGATTTACCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8Q7D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

45.729

100

0.469
  ssb Neisseria gonorrhoeae MS11

39.062

98.969

0.387
  ssb Neisseria meningitidis MC58

39.062

98.969

0.387

Multiple sequence alignment