Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABLB98_RS12860 Genome accession   NZ_CP157435
Coordinates   2680188..2680829 (-) Length   213 a.a.
NCBI ID   WP_348882396.1    Uniprot ID   A0AB39KIA0
Organism   Acinetobacter sp. XH1639     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2675188..2685829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS12840 (ABLB98_12835) aroK 2676123..2676689 (-) 567 WP_087535970.1 shikimate kinase AroK -
  ABLB98_RS12845 (ABLB98_12840) pilQ 2676700..2678853 (-) 2154 WP_348882409.1 type IV pilus secretin PilQ Machinery gene
  ABLB98_RS12850 (ABLB98_12845) pilP 2678915..2679442 (-) 528 WP_249570974.1 pilus assembly protein PilP Machinery gene
  ABLB98_RS12855 (ABLB98_12850) pilO 2679442..2680191 (-) 750 WP_348882395.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABLB98_RS12860 (ABLB98_12855) pilN 2680188..2680829 (-) 642 WP_348882396.1 PilN domain-containing protein Machinery gene
  ABLB98_RS12865 (ABLB98_12860) comM 2680829..2681887 (-) 1059 WP_348882397.1 pilus assembly protein PilM Machinery gene
  ABLB98_RS12870 (ABLB98_12865) ponA 2682050..2684602 (+) 2553 WP_348882398.1 penicillin-binding protein PBP1a -
  ABLB98_RS12875 (ABLB98_12870) - 2684622..2685440 (-) 819 WP_348882399.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23767.15 Da        Isoelectric Point: 6.0091

>NTDB_id=1006856 ABLB98_RS12860 WP_348882396.1 2680188..2680829(-) (pilN) [Acinetobacter sp. XH1639]
MAKINLLPWRDELREQKKKQFVAFCAGVAALGVVSVFSGWMYFDHKLNDQEQANQLIVSTNQNLDTQLKSLDGLQERRNA
IIERMKLIQGLQGQRPIAVRLVDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
ADDKKDKTTSSLVPRVEENYGSFVVTVDLGEIGTTVEADPTLEAVASGSGVVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1006856 ABLB98_RS12860 WP_348882396.1 2680188..2680829(-) (pilN) [Acinetobacter sp. XH1639]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAAAAAAAGAAACAGTTCGTTGCATTTTGTGCTGG
GGTAGCAGCATTAGGCGTAGTATCAGTTTTTTCTGGCTGGATGTACTTTGACCATAAGTTGAATGATCAAGAACAGGCAA
ATCAGTTAATTGTAAGTACTAATCAGAATTTAGATACTCAACTTAAGTCATTAGATGGTTTGCAAGAACGACGTAATGCA
ATTATTGAGCGTATGAAGTTGATTCAAGGCTTACAGGGACAGCGTCCTATTGCAGTGCGTTTAGTTGATGAGCTAGTGCG
AGTAACACCACCTACAATGTATTTGACAAAATTTACCCGTACAGGTGATAAATTTACCATTGAGGGTAAAGCAGAAAGTC
CAAACACCGTTGCTGAGCTTTTAAGAAATCTAGAAGCTTCACCTTGGTATCGTAATGCGTTTATGAATTCTTTCTTGGCG
GCAGATGATAAAAAAGATAAAACAACAAGCTCTTTAGTTCCTCGAGTTGAAGAAAACTATGGAAGTTTTGTGGTAACTGT
TGATTTGGGAGAAATAGGCACAACAGTTGAGGCTGACCCAACTTTAGAAGCAGTTGCATCAGGATCGGGGGTGGTGAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

75.587

100

0.756
  comN Acinetobacter baylyi ADP1

77.551

92.019

0.714

Multiple sequence alignment