Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ABLB98_RS12850 Genome accession   NZ_CP157435
Coordinates   2678915..2679442 (-) Length   175 a.a.
NCBI ID   WP_249570974.1    Uniprot ID   -
Organism   Acinetobacter sp. XH1639     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2673915..2684442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS12830 (ABLB98_12825) - 2674130..2674996 (-) 867 WP_348882394.1 hypothetical protein -
  ABLB98_RS12835 (ABLB98_12830) aroB 2675016..2676098 (-) 1083 WP_004660157.1 3-dehydroquinate synthase -
  ABLB98_RS12840 (ABLB98_12835) aroK 2676123..2676689 (-) 567 WP_087535970.1 shikimate kinase AroK -
  ABLB98_RS12845 (ABLB98_12840) pilQ 2676700..2678853 (-) 2154 WP_348882409.1 type IV pilus secretin PilQ Machinery gene
  ABLB98_RS12850 (ABLB98_12845) pilP 2678915..2679442 (-) 528 WP_249570974.1 pilus assembly protein PilP Machinery gene
  ABLB98_RS12855 (ABLB98_12850) pilO 2679442..2680191 (-) 750 WP_348882395.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABLB98_RS12860 (ABLB98_12855) pilN 2680188..2680829 (-) 642 WP_348882396.1 PilN domain-containing protein Machinery gene
  ABLB98_RS12865 (ABLB98_12860) comM 2680829..2681887 (-) 1059 WP_348882397.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19374.63 Da        Isoelectric Point: 8.9741

>NTDB_id=1006854 ABLB98_RS12850 WP_249570974.1 2678915..2679442(-) (pilP) [Acinetobacter sp. XH1639]
MNNYKILCGLLISIGLVGCDSRIDTVNQQMADIRNQPPLSIEPAPVFTPVPLFNYSAHQLKSPFMPSSLAAELKIMAGKR
VYPNLNRQPQPLESYALEALNMKGSMRGKMNETIALIQTPDKQIERIQVGSYLGMNQGRVVKISPTQIDLIEIVPDGRDG
YVERPRTLVLIGPVS

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1006854 ABLB98_RS12850 WP_249570974.1 2678915..2679442(-) (pilP) [Acinetobacter sp. XH1639]
ATGAATAATTATAAAATACTATGCGGTTTATTGATTAGTATTGGTTTGGTTGGCTGCGATTCACGTATTGATACTGTAAA
TCAACAAATGGCAGATATTCGTAATCAACCACCCTTATCGATTGAGCCAGCACCTGTGTTCACACCTGTGCCATTATTTA
ACTATTCAGCACATCAACTAAAAAGCCCATTTATGCCGAGTTCATTGGCTGCTGAATTAAAAATTATGGCTGGGAAGCGG
GTTTATCCTAATTTGAATCGTCAACCTCAACCTTTAGAAAGTTATGCTTTAGAAGCATTAAACATGAAAGGAAGTATGCG
AGGTAAAATGAATGAAACAATTGCTTTAATCCAAACGCCAGATAAACAAATTGAGCGTATACAGGTTGGTAGCTATTTGG
GGATGAATCAAGGGCGTGTAGTTAAAATTAGCCCTACACAAATTGATTTAATAGAAATTGTGCCAGATGGACGAGATGGT
TATGTAGAAAGACCACGCACACTCGTTTTAATTGGGCCGGTATCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

78.363

97.714

0.766
  comL Acinetobacter baylyi ADP1

71.098

98.857

0.703

Multiple sequence alignment