Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   GPW51_RS00370 Genome accession   NZ_LR738721
Coordinates   64531..65121 (+) Length   196 a.a.
NCBI ID   WP_011921679.1    Uniprot ID   A0A0H3N1H3
Organism   Streptococcus suis isolate S10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59531..70121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW51_RS00360 - 60914..62437 (+) 1524 WP_011921677.1 Heme/copper-type cytochrome/quinol oxidase subunit 1 -
  GPW51_RS00365 hexB 62555..64492 (+) 1938 WP_012774891.1 DNA mismatch repair endonuclease MutL Machinery gene
  GPW51_RS00370 ruvA 64531..65121 (+) 591 WP_011921679.1 Holliday junction branch migration protein RuvA Machinery gene
  GPW51_RS00380 - 65846..66415 (+) 570 WP_012774893.1 DNA-3-methyladenine glycosylase I -
  GPW51_RS00385 cinA 66452..67633 (+) 1182 WP_012774894.1 competence/damage-inducible protein A Machinery gene
  GPW51_RS00390 recA 67685..68836 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  GPW51_RS00395 spx 69072..69470 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  GPW51_RS00400 - 69570..69836 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21739.10 Da        Isoelectric Point: 5.0800

>NTDB_id=1006823 GPW51_RS00370 WP_011921679.1 64531..65121(+) (ruvA) [Streptococcus suis isolate S10]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1006823 GPW51_RS00370 WP_011921679.1 64531..65121(+) (ruvA) [Streptococcus suis isolate S10]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATCGAGCAGAAAAACATTAC
CTACCTGACCAAATTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTTGAAGAAGCCATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N1H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.142

100

0.765
  ruvA Streptococcus pneumoniae D39

76.142

100

0.765
  ruvA Streptococcus pneumoniae TIGR4

76.142

100

0.765
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408