Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABLC00_RS01365 Genome accession   NZ_CP157432
Coordinates   287736..289157 (-) Length   473 a.a.
NCBI ID   WP_033846927.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 282736..294157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS01350 (ABLC00_01350) lptG 283789..284859 (+) 1071 WP_002048976.1 LPS export ABC transporter permease LptG -
  ABLC00_RS01355 (ABLC00_01355) gpmI 284985..286532 (+) 1548 WP_022575138.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABLC00_RS01360 (ABLC00_01360) - 286548..287732 (+) 1185 WP_348941169.1 S41 family peptidase -
  ABLC00_RS01365 (ABLC00_01365) pilR 287736..289157 (-) 1422 WP_033846927.1 sigma-54 dependent transcriptional regulator Regulator
  ABLC00_RS01370 (ABLC00_01370) pilS 289181..290749 (-) 1569 WP_348941171.1 PAS domain-containing sensor histidine kinase Regulator
  ABLC00_RS01375 (ABLC00_01375) - 290760..291395 (-) 636 WP_000633799.1 response regulator -
  ABLC00_RS01380 (ABLC00_01380) pbpG 291607..292653 (+) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABLC00_RS01385 (ABLC00_01385) thrC 292762..293901 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53175.36 Da        Isoelectric Point: 6.6690

>NTDB_id=1006787 ABLC00_RS01365 WP_033846927.1 287736..289157(-) (pilR) [Acinetobacter nosocomialis strain XH1679]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKIEHDFAESALENKLLIGRSQPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPLKQLTEGAETYLLQQHFPGNVRELRNMIERAITLSDDANIDVPHLHPAPLRANISNSIATVSQS
FQNPVATPQIVKKLPSEGLERYLESIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1006787 ABLC00_RS01365 WP_033846927.1 287736..289157(-) (pilR) [Acinetobacter nosocomialis strain XH1679]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAGGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGAGTTAGTCAAACATGTCTCTCAAAATTATACAAACACACCCATT
GCGGTTTTAACTGCTTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGGGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAGAAAGCCTTAAATCGGCAAAAAATAGAGCATGATTTTGCAGAGAGTG
CTCTAGAAAACAAATTATTAATCGGCCGCTCTCAGCCTATTCAACAACTACGCATCGCAATTAAAAAAATTGCTCGTTCT
CAAGCACCTGTATTTGTTACTGGCGAGTCTGGAACAGGTAAAGAAGTGGTTGCCAACCTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGGCCTTTTATTGCGATTAACTGTGGCGCTATTCCAACTGAACTGATGGAAAGCGAGCTGTTCGGACATAAAA
AAGGTAGCTTTACAGGGGCAACGCAAGACAAACAAGGCCTCATTTTATCTGCTCATGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTTAGTATGCAGGTTAAATTACTACGCGCAGTACAAGAAAAAAAGATTCGTCCTGTCGGTTCCGA
TCAGGAAATTGATGTTGATTTTCGGGTGATTAGTGCGAGTCATCAAGACTTAGATTTATTGGTTCGACAAGGCAAATTTC
GTCAGGATTTATTCTTCCGTATCCATGTTATGGATCTCATGTTACCGCCTTTACGCGAACGTGGTGAAGATGTCTTGTTA
CTTGCGAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACCCCACTTAAACAATTAACCGAGGGCGCTGAAACTTA
TCTGCTACAACAACACTTTCCCGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGAGCAATTACTTTAAGTGACGATG
CCAATATTGATGTACCACATTTGCACCCTGCCCCTTTAAGAGCAAATATTTCTAATTCAATCGCAACGGTATCTCAAAGC
TTTCAGAATCCCGTAGCTACGCCACAGATTGTAAAAAAATTACCAAGTGAGGGTCTAGAGCGTTATTTAGAGAGTATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAATCGAACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GTTCTTTACGCTACCGTTTGAAGAAATTTGGGTTAGATACTGAAACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

94.715

100

0.947
  pilR Pseudomonas aeruginosa PAK

50.545

97.04

0.49

Multiple sequence alignment