Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABLC00_RS01370 Genome accession   NZ_CP157432
Coordinates   289181..290749 (-) Length   522 a.a.
NCBI ID   WP_348941171.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 284181..295749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS01355 (ABLC00_01355) gpmI 284985..286532 (+) 1548 WP_022575138.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABLC00_RS01360 (ABLC00_01360) - 286548..287732 (+) 1185 WP_348941169.1 S41 family peptidase -
  ABLC00_RS01365 (ABLC00_01365) pilR 287736..289157 (-) 1422 WP_033846927.1 sigma-54 dependent transcriptional regulator Regulator
  ABLC00_RS01370 (ABLC00_01370) pilS 289181..290749 (-) 1569 WP_348941171.1 PAS domain-containing sensor histidine kinase Regulator
  ABLC00_RS01375 (ABLC00_01375) - 290760..291395 (-) 636 WP_000633799.1 response regulator -
  ABLC00_RS01380 (ABLC00_01380) pbpG 291607..292653 (+) 1047 WP_004710943.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABLC00_RS01385 (ABLC00_01385) thrC 292762..293901 (-) 1140 WP_002048893.1 threonine synthase -
  ABLC00_RS01390 (ABLC00_01390) - 293957..295258 (-) 1302 WP_002048970.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59173.63 Da        Isoelectric Point: 6.8576

>NTDB_id=1006788 ABLC00_RS01370 WP_348941171.1 289181..290749(-) (pilS) [Acinetobacter nosocomialis strain XH1679]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTNAQTDNSLQQPSLYFYTLLSYSIVSLVQLLCFKFIAIQTTRQ
LILFFIVDIICLSLLSFSAGEPNLQISLLYVIAIFTSAILLSARVSLVITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEQGYLVLDENYDIVVSNPAACSLLGIPPQYANE
KYPLAKWHADLFEILKFGDLKENDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIDLNNFINTLLDEDLSDVK
HSIQLKISDRSLKFLFDEKQLRQVMINLVRNALRHNAPDSPNVMINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIF

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1006788 ABLC00_RS01370 WP_348941171.1 289181..290749(-) (pilS) [Acinetobacter nosocomialis strain XH1679]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCAATGCTCAAACCGACAATAGTTTGCAGCAACCCTCTTTATATTTTT
ACACTTTACTAAGCTATTCAATTGTAAGTCTTGTGCAATTGTTATGCTTTAAATTTATTGCTATCCAAACTACTCGGCAG
CTTATTTTATTTTTTATTGTCGACATTATTTGTTTAAGCCTCCTTTCATTTTCTGCTGGGGAGCCTAATTTACAAATTAG
TTTGCTGTATGTGATTGCAATCTTTACTTCGGCGATTTTGCTCAGTGCAAGAGTGTCTTTAGTTATTACCTTACTTGCGG
TTATTGCGGTTATTTATCAACGCTTCGTGGGTAGTTTATTTGACTACAACAATCTAAACACAATCGGTAATAGCGCTTTA
TTAGCTTTTTTATTTTTCGTTGTTCACGGGATTGGACAAATTGCAGTGCAGCGCTTTAAATTACTTGAGGCACTCACCTT
TCACCAGTCAATCGAGCTTTACCAGCTTCAAAATATTAACCGTTATATTTTAGAGCAAATTGAACAAGGCTATTTAGTTT
TAGACGAAAATTACGACATTGTTGTTAGCAATCCCGCTGCTTGTTCATTGCTTGGTATTCCTCCCCAGTATGCCAATGAA
AAATATCCTTTAGCAAAGTGGCATGCCGATTTATTTGAAATATTGAAGTTTGGCGACTTAAAAGAAAATGACCGATTTAT
TTTTGAGTCTCGGCTATCGGCTTATTCCATTAATATTAAAGTACAGCATCTTTTAGTGCCGCAACAAGCTCTGACACTAC
TCATTTTACAAGATGCCCAACAAATTAATCAGCAAGCACAGCAACTTAAACTTGCCGCTTTAGGGCAACTCTCGGCAAGT
ATTGCACATGAAATCCGCAATCCTCTGGCTGCAATTGTTCAAGCAAATGAGTTACTTAAAGATAGTGATCTCGAACAACA
AAATACTTTACGCCATATGATTGGCAAACAAACTAAACGCATTGATAGTATTGTTCAGGACACCTTAGGACTTGCTCGTA
GCGAAAGAACACACCCTATTCAGATTGACTTAAACAATTTTATAAATACGCTACTCGATGAAGATTTATCTGACGTTAAG
CACTCAATTCAACTCAAAATTTCTGATCGTTCTTTAAAATTTTTATTTGACGAAAAACAACTAAGACAAGTCATGATCAA
TTTAGTGCGAAATGCTTTACGACATAATGCACCCGACTCACCGAATGTCATGATCAACATTCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACCTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATTTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

93.87

100

0.939

Multiple sequence alignment