Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | UXQ45_RS05440 | Genome accession | NZ_CP157420 |
| Coordinates | 1119328..1119798 (+) | Length | 156 a.a. |
| NCBI ID | WP_029549393.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain BSN48-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1108787..1150847 | 1119328..1119798 | within | 0 |
Gene organization within MGE regions
Location: 1108787..1150847
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UXQ45_RS05345 (UXQ45_005345) | - | 1108787..1110172 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| UXQ45_RS05350 (UXQ45_005350) | - | 1110379..1110501 (-) | 123 | WP_001077637.1 | hypothetical protein | - |
| UXQ45_RS05355 (UXQ45_005355) | - | 1110522..1110983 (-) | 462 | WP_000525016.1 | hypothetical protein | - |
| UXQ45_RS05360 (UXQ45_005360) | - | 1110996..1111319 (-) | 324 | WP_001260487.1 | helix-turn-helix transcriptional regulator | - |
| UXQ45_RS05365 (UXQ45_005365) | - | 1111483..1111731 (+) | 249 | WP_000272858.1 | helix-turn-helix transcriptional regulator | - |
| UXQ45_RS05370 (UXQ45_005370) | - | 1111747..1112535 (+) | 789 | WP_001148566.1 | phage antirepressor KilAC domain-containing protein | - |
| UXQ45_RS05375 (UXQ45_005375) | - | 1112552..1112710 (+) | 159 | WP_000398750.1 | hypothetical protein | - |
| UXQ45_RS05380 (UXQ45_005380) | - | 1112685..1113014 (-) | 330 | WP_000514498.1 | hypothetical protein | - |
| UXQ45_RS05385 (UXQ45_005385) | - | 1113071..1113847 (+) | 777 | WP_001148542.1 | Rha family transcriptional regulator | - |
| UXQ45_RS05390 (UXQ45_005390) | - | 1113911..1114069 (+) | 159 | WP_223200610.1 | pathogenicity island protein | - |
| UXQ45_RS05395 (UXQ45_005395) | - | 1114260..1114490 (-) | 231 | WP_000395455.1 | hypothetical protein | - |
| UXQ45_RS05400 (UXQ45_005400) | - | 1114540..1114677 (+) | 138 | WP_000230552.1 | hypothetical protein | - |
| UXQ45_RS05405 (UXQ45_005405) | - | 1114670..1114840 (+) | 171 | WP_001837399.1 | DUF1270 domain-containing protein | - |
| UXQ45_RS05410 (UXQ45_005410) | - | 1114821..1115159 (+) | 339 | WP_015990309.1 | transcriptional regulator | - |
| UXQ45_RS05415 (UXQ45_005415) | - | 1115223..1115483 (+) | 261 | WP_001837398.1 | DUF1108 family protein | - |
| UXQ45_RS05420 (UXQ45_005420) | - | 1115492..1115755 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| UXQ45_RS05425 (UXQ45_005425) | - | 1115764..1117707 (+) | 1944 | WP_061643880.1 | AAA family ATPase | - |
| UXQ45_RS05430 (UXQ45_005430) | - | 1117709..1118629 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| UXQ45_RS05435 (UXQ45_005435) | - | 1118710..1119327 (+) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| UXQ45_RS05440 (UXQ45_005440) | ssbA | 1119328..1119798 (+) | 471 | WP_029549393.1 | single-stranded DNA-binding protein | Machinery gene |
| UXQ45_RS05445 (UXQ45_005445) | - | 1119828..1120712 (+) | 885 | WP_271321815.1 | DnaD domain protein | - |
| UXQ45_RS05450 (UXQ45_005450) | - | 1120719..1120937 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| UXQ45_RS05455 (UXQ45_005455) | - | 1120946..1121350 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| UXQ45_RS05460 (UXQ45_005460) | - | 1121363..1121734 (+) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| UXQ45_RS05465 (UXQ45_005465) | - | 1121734..1121991 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| UXQ45_RS05470 (UXQ45_005470) | - | 1121988..1122236 (+) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| UXQ45_RS05475 (UXQ45_005475) | - | 1122248..1122415 (+) | 168 | WP_001624242.1 | hypothetical protein | - |
| UXQ45_RS05480 (UXQ45_005480) | - | 1122408..1122659 (+) | 252 | WP_001065091.1 | DUF1024 family protein | - |
| UXQ45_RS05485 (UXQ45_005485) | - | 1122649..1122831 (+) | 183 | WP_000028422.1 | hypothetical protein | - |
| UXQ45_RS05490 (UXQ45_005490) | - | 1122824..1123366 (+) | 543 | WP_000185659.1 | dUTP pyrophosphatase | - |
| UXQ45_RS05495 (UXQ45_005495) | - | 1123403..1123609 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| UXQ45_RS05500 (UXQ45_005500) | - | 1123606..1123992 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| UXQ45_RS05505 (UXQ45_005505) | - | 1123989..1124162 (+) | 174 | WP_000595244.1 | transcriptional activator RinB | - |
| UXQ45_RS05510 (UXQ45_005510) | - | 1124163..1124309 (+) | 147 | WP_000990001.1 | hypothetical protein | - |
| UXQ45_RS05515 (UXQ45_005515) | - | 1124333..1124755 (+) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| UXQ45_RS05520 (UXQ45_005520) | - | 1124942..1125382 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| UXQ45_RS05525 (UXQ45_005525) | - | 1125369..1126646 (+) | 1278 | WP_064265441.1 | PBSX family phage terminase large subunit | - |
| UXQ45_RS05530 (UXQ45_005530) | - | 1126657..1128195 (+) | 1539 | WP_000909977.1 | phage portal protein | - |
| UXQ45_RS05535 (UXQ45_005535) | - | 1128202..1129197 (+) | 996 | WP_001133044.1 | minor capsid protein | - |
| UXQ45_RS05540 (UXQ45_005540) | - | 1129270..1129440 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| UXQ45_RS05545 (UXQ45_005545) | - | 1129468..1129561 (+) | 94 | Protein_1085 | hypothetical protein | - |
| UXQ45_RS05550 (UXQ45_005550) | - | 1129549..1130169 (+) | 621 | WP_000392151.1 | DUF4355 domain-containing protein | - |
| UXQ45_RS05555 (UXQ45_005555) | - | 1130183..1131157 (+) | 975 | WP_000438512.1 | phage major capsid protein | - |
| UXQ45_RS05560 (UXQ45_005560) | - | 1131179..1131466 (+) | 288 | WP_001114085.1 | hypothetical protein | - |
| UXQ45_RS05565 (UXQ45_005565) | - | 1131475..1131807 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| UXQ45_RS05570 (UXQ45_005570) | - | 1131804..1132106 (+) | 303 | WP_095252307.1 | hypothetical protein | - |
| UXQ45_RS05575 (UXQ45_005575) | - | 1132106..1132453 (+) | 348 | WP_064277304.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| UXQ45_RS05580 (UXQ45_005580) | - | 1132465..1132848 (+) | 384 | WP_000188649.1 | hypothetical protein | - |
| UXQ45_RS05585 (UXQ45_005585) | - | 1132867..1133448 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| UXQ45_RS05590 (UXQ45_005590) | - | 1133510..1133875 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| UXQ45_RS05595 (UXQ45_005595) | - | 1133905..1134249 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| UXQ45_RS05600 (UXQ45_005600) | - | 1134266..1137730 (+) | 3465 | WP_196496712.1 | hypothetical protein | - |
| UXQ45_RS05605 (UXQ45_005605) | - | 1137743..1138690 (+) | 948 | WP_031794375.1 | phage tail family protein | - |
| UXQ45_RS05610 (UXQ45_005610) | - | 1138699..1140600 (+) | 1902 | WP_000152714.1 | SGNH/GDSL hydrolase family protein | - |
| UXQ45_RS05615 (UXQ45_005615) | - | 1140615..1142525 (+) | 1911 | WP_064277290.1 | hypothetical protein | - |
| UXQ45_RS05620 (UXQ45_005620) | - | 1142525..1144348 (+) | 1824 | WP_064277292.1 | phage baseplate upper protein | - |
| UXQ45_RS05625 (UXQ45_005625) | - | 1144348..1144725 (+) | 378 | WP_000705902.1 | DUF2977 domain-containing protein | - |
| UXQ45_RS05630 (UXQ45_005630) | - | 1144729..1144902 (+) | 174 | WP_001790193.1 | XkdX family protein | - |
| UXQ45_RS05635 (UXQ45_005635) | - | 1144943..1145242 (+) | 300 | WP_000466770.1 | DUF2951 domain-containing protein | - |
| UXQ45_RS05640 (UXQ45_005640) | - | 1145379..1147277 (+) | 1899 | WP_000524017.1 | glucosaminidase domain-containing protein | - |
| UXQ45_RS05645 (UXQ45_005645) | - | 1147290..1148528 (+) | 1239 | WP_000276641.1 | BppU family phage baseplate upper protein | - |
| UXQ45_RS05650 (UXQ45_005650) | - | 1148533..1148928 (+) | 396 | WP_000398862.1 | hypothetical protein | - |
| UXQ45_RS05655 (UXQ45_005655) | - | 1148984..1149421 (+) | 438 | WP_000354121.1 | phage holin | - |
| UXQ45_RS05660 (UXQ45_005660) | - | 1149402..1150847 (+) | 1446 | WP_095252304.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17654.38 Da Isoelectric Point: 4.6228
>NTDB_id=1006712 UXQ45_RS05440 WP_029549393.1 1119328..1119798(+) (ssbA) [Staphylococcus aureus strain BSN48-2]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1006712 UXQ45_RS05440 WP_029549393.1 1119328..1119798(+) (ssbA) [Staphylococcus aureus strain BSN48-2]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.017 |
100 |
0.692 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |