Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FXY05_RS05495 Genome accession   NZ_LR698956
Coordinates   1104481..1105032 (-) Length   183 a.a.
NCBI ID   WP_000635190.1    Uniprot ID   -
Organism   Helicobacter pylori isolate MGYG-HGUT-01357     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1099481..1110032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXY05_RS05470 rpmB 1100082..1100270 (+) 189 WP_001119004.1 50S ribosomal protein L28 -
  FXY05_RS05475 - 1100421..1101557 (+) 1137 WP_000461978.1 potassium channel family protein -
  FXY05_RS05480 - 1101559..1101954 (-) 396 WP_001199996.1 hypothetical protein -
  FXY05_RS05485 - 1102043..1104429 (-) 2387 Protein_1049 DUF3519 domain-containing protein -
  FXY05_RS05495 ruvA 1104481..1105032 (-) 552 WP_000635190.1 Holliday junction branch migration protein RuvA Machinery gene
  FXY05_RS05500 - 1105056..1106900 (-) 1845 WP_000051030.1 FapA family protein -
  FXY05_RS05505 murJ 1106993..1108453 (+) 1461 WP_000913576.1 murein biosynthesis integral membrane protein MurJ -
  FXY05_RS05510 cysS 1108454..1109851 (+) 1398 WP_000471290.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20070.67 Da        Isoelectric Point: 8.0209

>NTDB_id=1006569 FXY05_RS05495 WP_000635190.1 1104481..1105032(-) (ruvA) [Helicobacter pylori isolate MGYG-HGUT-01357]
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETGPACNEVFLALESLGFKSAEINKV
LKTLKPNLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=1006569 FXY05_RS05495 WP_000635190.1 1104481..1105032(-) (ruvA) [Helicobacter pylori isolate MGYG-HGUT-01357]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGTGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGTTTTTCGCCAAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTGGCCCTGCGTGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGTTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCAATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(141-181)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

95.082

100

0.951
  ruvA Streptococcus pneumoniae R6

34.359

100

0.366
  ruvA Streptococcus pneumoniae D39

34.359

100

0.366
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361