Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABKP85_RS12495 | Genome accession | NZ_CP157379 |
| Coordinates | 2442318..2442818 (-) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris strain NZ3900 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2437318..2447818
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABKP85_RS12470 (ABKP85_12435) | gnd | 2438443..2439348 (-) | 906 | WP_011836101.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| ABKP85_RS12475 (ABKP85_12440) | - | 2439718..2440566 (+) | 849 | WP_011836102.1 | MurR/RpiR family transcriptional regulator | - |
| ABKP85_RS12480 (ABKP85_12445) | - | 2440605..2440913 (+) | 309 | WP_011836103.1 | DUF960 domain-containing protein | - |
| ABKP85_RS12485 (ABKP85_12450) | - | 2440985..2441770 (-) | 786 | WP_011836104.1 | metallophosphoesterase | - |
| ABKP85_RS12490 (ABKP85_12455) | rpsR | 2441901..2442146 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| ABKP85_RS12495 (ABKP85_12460) | ssb | 2442318..2442818 (-) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| ABKP85_RS12500 (ABKP85_12465) | rpsF | 2442848..2443141 (-) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| ABKP85_RS12505 (ABKP85_12470) | - | 2443335..2444189 (-) | 855 | WP_011836105.1 | undecaprenyl-diphosphate phosphatase | - |
| ABKP85_RS12510 (ABKP85_12475) | - | 2444711..2446177 (+) | 1467 | WP_014735185.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=1006487 ABKP85_RS12495 WP_011677241.1 2442318..2442818(-) (ssb) [Lactococcus cremoris strain NZ3900]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=1006487 ABKP85_RS12495 WP_011677241.1 2442318..2442818(-) (ssb) [Lactococcus cremoris strain NZ3900]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
AACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGATCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
AACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |