Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FQT45_RS08020 Genome accession   NZ_LR595858
Coordinates   1638726..1639406 (-) Length   226 a.a.
NCBI ID   WP_077323438.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1633726..1644406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS10700 (NCTC10228_01648) - 1636497..1637444 (+) 948 WP_223837105.1 transposase -
  FQT45_RS10705 (NCTC10228_01649) - 1637441..1638022 (+) 582 WP_232036635.1 transposase -
  FQT45_RS08015 (NCTC10228_01650) hpf 1638103..1638651 (-) 549 WP_077323437.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FQT45_RS08020 (NCTC10228_01651) comFC/cflB 1638726..1639406 (-) 681 WP_077323438.1 ComF family protein Machinery gene
  FQT45_RS08025 (NCTC10228_01652) comFA/cflA 1639396..1640697 (-) 1302 WP_077323439.1 DEAD/DEAH box helicase Machinery gene
  FQT45_RS08030 (NCTC10228_01653) - 1640753..1641382 (+) 630 WP_077323440.1 YigZ family protein -
  FQT45_RS08035 (NCTC10228_01654) cysK 1641495..1642421 (+) 927 WP_077323441.1 cysteine synthase A -
  FQT45_RS08040 (NCTC10228_01655) - 1642454..1642807 (-) 354 WP_007892969.1 S1 RNA-binding domain-containing protein -
  FQT45_RS08045 (NCTC10228_01656) - 1642807..1644207 (-) 1401 WP_077323442.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26298.55 Da        Isoelectric Point: 9.1533

>NTDB_id=1006413 FQT45_RS08020 WP_077323438.1 1638726..1639406(-) (comFC/cflB) [Streptococcus pseudoporcinus strain NCTC10228]
MDHNCLLCGNRIEDSYSLLEIIFLMKEELITCQPCQKKFKRVDQKHCPACFKSGSAKLCHDCIEWNKKGYEVNHSAMFKY
NDYMKAYFSTYKFQGDYLLRKVFAKSLLKAVRKDYKEYVLVPIPVSPERTEIRGFNQITAILEVAGCQFLPMISKVENEH
QSHRNKVQRLESANSFYANELTKKVQKNQKLLIIDDIYTTGTTIKHVRDVLIAEGFTNIKSFSIAR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1006413 FQT45_RS08020 WP_077323438.1 1638726..1639406(-) (comFC/cflB) [Streptococcus pseudoporcinus strain NCTC10228]
ATGGATCATAATTGCCTTTTATGTGGAAATCGTATTGAAGACAGTTATTCTCTTTTAGAAATTATTTTTTTAATGAAAGA
GGAACTGATAACATGTCAACCTTGTCAAAAGAAGTTTAAACGAGTGGATCAGAAACATTGTCCAGCTTGTTTCAAATCTG
GGTCAGCTAAACTATGTCATGATTGTATTGAGTGGAACAAAAAAGGATATGAGGTTAACCATTCTGCTATGTTCAAATAT
AACGATTACATGAAAGCGTATTTTTCAACTTACAAATTTCAAGGGGACTATTTACTTAGAAAAGTTTTTGCAAAATCATT
ACTAAAAGCAGTAAGAAAAGATTATAAGGAATATGTGCTAGTACCGATCCCTGTCAGTCCAGAAAGGACAGAAATAAGAG
GATTTAATCAAATAACAGCAATCCTGGAAGTGGCAGGCTGTCAATTTTTACCAATGATTAGTAAAGTGGAAAACGAGCAT
CAATCACACAGGAATAAGGTACAACGTTTAGAAAGCGCTAATAGCTTCTATGCTAATGAACTGACTAAAAAAGTTCAAAA
AAATCAAAAATTATTAATTATTGATGATATTTATACTACTGGAACGACGATAAAACATGTTAGAGACGTGCTTATTGCAG
AAGGCTTTACGAATATAAAAAGTTTCAGTATTGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.892

98.23

0.412
  comFC/cflB Streptococcus mitis SK321

41.892

98.23

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

41.441

98.23

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.991

98.23

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.991

98.23

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.991

98.23

0.403