Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   QUD59_RS16770 Genome accession   NZ_AP027292
Coordinates   3574136..3574876 (+) Length   246 a.a.
NCBI ID   WP_286238365.1    Uniprot ID   -
Organism   Neptuniibacter halophilus strain LMG 25378     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3569136..3579876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD59_RS16750 dsbD 3569406..3571265 (+) 1860 WP_286238360.1 protein-disulfide reductase DsbD -
  QUD59_RS16755 - 3571792..3572886 (+) 1095 WP_286238361.1 hypothetical protein -
  QUD59_RS16760 - 3572972..3573457 (+) 486 WP_286238362.1 paraquat-inducible protein A -
  QUD59_RS16765 - 3573450..3574076 (+) 627 WP_286238364.1 uracil-DNA glycosylase family protein -
  QUD59_RS16770 ideA 3574136..3574876 (+) 741 WP_286238365.1 endonuclease I family protein Regulator
  QUD59_RS16775 - 3574918..3575085 (+) 168 WP_286238367.1 YqaE/Pmp3 family membrane protein -
  QUD59_RS16780 - 3575082..3575717 (-) 636 WP_286238369.1 pseudouridine synthase -
  QUD59_RS16785 icd 3575849..3577102 (+) 1254 WP_286238370.1 NADP-dependent isocitrate dehydrogenase -
  QUD59_RS16790 cspD 3577190..3577405 (-) 216 WP_286238373.1 cold shock domain-containing protein CspD -
  QUD59_RS16795 clpS 3577623..3577985 (+) 363 WP_286238376.1 ATP-dependent Clp protease adapter ClpS -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 28144.12 Da        Isoelectric Point: 9.5635

>NTDB_id=100629 QUD59_RS16770 WP_286238365.1 3574136..3574876(+) (ideA) [Neptuniibacter halophilus strain LMG 25378]
MRKQLVSIALLLPAMALADKPHTFSQSKKQLAVIYADNQTSFYCGCEYYKQGKKLKPALAGCGYQPRKNANRANRIEWEH
VMPAWAFGHQLQCWQEGGRKACRKDPRFVQMEGDMHNLVPAVGEVNGDRSNYSFGMLPGESRVYGRCDVEIDFKARKVEP
PEQIRGDIARTYFYMRDRYGIKISSKQEKLFSVWDRQDPVDAWEKERNLRISRIQGNANPYVDGAESVTVKESSVLAGLR
RLLSTD

Nucleotide


Download         Length: 741 bp        

>NTDB_id=100629 QUD59_RS16770 WP_286238365.1 3574136..3574876(+) (ideA) [Neptuniibacter halophilus strain LMG 25378]
ATGCGCAAGCAGTTAGTGAGTATCGCGCTCCTTCTGCCGGCAATGGCGCTGGCAGATAAACCACACACATTCAGTCAGTC
GAAGAAGCAGTTGGCAGTTATTTATGCTGACAACCAAACCAGCTTTTATTGCGGCTGTGAATATTACAAACAGGGTAAGA
AATTAAAACCCGCACTGGCTGGCTGTGGCTACCAGCCAAGAAAAAATGCCAATCGTGCGAACCGGATCGAGTGGGAGCAT
GTGATGCCGGCCTGGGCGTTTGGGCATCAGTTACAGTGCTGGCAGGAGGGTGGACGTAAAGCCTGCCGGAAAGATCCGCG
TTTCGTACAGATGGAAGGGGATATGCATAATCTGGTTCCCGCTGTAGGTGAGGTCAACGGAGATCGTTCTAATTACAGCT
TTGGCATGTTACCCGGCGAGTCCCGGGTGTACGGTCGCTGTGATGTGGAGATCGATTTTAAAGCCCGAAAAGTTGAGCCC
CCTGAGCAGATACGCGGAGATATAGCGCGAACCTATTTTTACATGCGGGATCGCTACGGGATAAAAATCAGTTCAAAGCA
GGAGAAGCTATTCTCGGTCTGGGATCGACAGGACCCGGTCGATGCGTGGGAAAAGGAGCGTAATCTGCGAATCAGCAGGA
TACAGGGCAATGCTAACCCCTATGTCGACGGTGCCGAATCAGTTACAGTGAAGGAGTCGTCTGTGCTTGCAGGCCTGAGG
CGGCTATTAAGTACGGATTAA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(25-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

56.502

90.65

0.512
  dns Vibrio parahaemolyticus RIMD 2210633

54.626

92.276

0.504
  dns Aliivibrio fischeri ES114

54.505

90.244

0.492
  dns Vibrio cholerae strain A1552

54.091

89.431

0.484
  dns Campylobacter jejuni RM1221

42.922

89.024

0.382

Multiple sequence alignment