Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABHF33_RS10435 Genome accession   NZ_CP157355
Coordinates   2196332..2197708 (+) Length   458 a.a.
NCBI ID   WP_348943910.1    Uniprot ID   A0AAU7F794
Organism   Chitinibacter sp. FCG-7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2191332..2202708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF33_RS10415 (ABHF33_10415) ttcA 2192256..2193224 (+) 969 WP_348943907.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  ABHF33_RS10420 (ABHF33_10420) - 2193224..2194012 (+) 789 WP_348943908.1 fused MFS/spermidine synthase -
  ABHF33_RS10425 (ABHF33_10425) - 2194144..2194647 (+) 504 WP_157314332.1 RNA pyrophosphohydrolase -
  ABHF33_RS10430 (ABHF33_10430) - 2194765..2196348 (+) 1584 WP_348943909.1 ATP-binding protein -
  ABHF33_RS10435 (ABHF33_10435) pilR 2196332..2197708 (+) 1377 WP_348943910.1 sigma-54 dependent transcriptional regulator Regulator
  ABHF33_RS10440 (ABHF33_10440) ampD 2197764..2198363 (+) 600 WP_348943911.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ABHF33_RS10445 (ABHF33_10445) - 2198471..2200363 (+) 1893 WP_348943912.1 potassium transporter Kup -
  ABHF33_RS10450 (ABHF33_10450) - 2200588..2201643 (+) 1056 WP_348943913.1 porin -
  ABHF33_RS10455 (ABHF33_10455) - 2201722..2202354 (-) 633 WP_348943914.1 pyrimidine 5'-nucleotidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50336.04 Da        Isoelectric Point: 6.1982

>NTDB_id=1006247 ABHF33_RS10435 WP_348943910.1 2196332..2197708(+) (pilR) [Chitinibacter sp. FCG-7]
MAKKSKVLPRVLVVDDEADLADLLELTLLKMGLDVVKANGVAVARTLLDSQRFDLCLSDMRMADGEGLELVQHIHARKLD
VPIAILTAYGSTNNAIAALKAGAFDYLAKPVSLEQLRTLVRSALKLDAPEPASQSLPVDSPLLGSSPALLHVLALVDKLA
RNLAPVYITGESGSGKERAARLIHAKSARADKPFIAVNCGAIPETLMESEFFGYRKGAFTGANEDRDGFFQAAHGGTLFL
DEVADLPLAMQVKLLRVIQERKVRQVGGVAEVDVDVRIISATHQNLSRCVEAGKFRQDLYYRLNVIELKMPPLREMGEDV
LLIAQAVLKKIAQRHNMDEPVLQSDALVALRRYDFPGNVRELENLLERALALSDGMHIYAEDLHIQHSTADKAEAQAANL
GDTYPLQDYLDRVEKAAILAALDKTNFNRTQAAKLLGITFRSMRYRLDRLGICQEGED

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1006247 ABHF33_RS10435 WP_348943910.1 2196332..2197708(+) (pilR) [Chitinibacter sp. FCG-7]
ATGGCCAAAAAATCTAAAGTATTGCCGCGTGTGCTGGTCGTTGACGATGAAGCTGATCTGGCCGACTTGCTTGAGCTGAC
CTTGTTGAAAATGGGGCTGGACGTGGTCAAGGCCAATGGCGTTGCCGTGGCCAGAACCCTGCTCGATAGCCAGCGTTTTG
ATCTGTGCCTGTCCGATATGCGGATGGCCGATGGCGAAGGGCTGGAGCTGGTGCAGCATATTCATGCGCGCAAGCTGGAT
GTGCCGATTGCCATTCTGACCGCTTATGGCAGCACCAATAATGCTATTGCCGCGCTCAAAGCGGGGGCGTTTGATTATCT
GGCCAAGCCGGTGTCGCTGGAGCAATTGCGTACGCTGGTGCGCTCTGCGTTGAAACTCGATGCGCCCGAGCCCGCCAGCC
AGTCCTTACCGGTAGATAGTCCTTTGCTCGGCAGCTCGCCCGCGCTCTTGCATGTGCTGGCGCTGGTCGACAAGCTGGCG
CGCAATCTGGCGCCGGTTTATATCACCGGTGAATCGGGTTCGGGTAAAGAGCGTGCCGCTCGGCTGATTCATGCCAAATC
GGCGCGTGCTGACAAGCCGTTTATCGCAGTCAACTGCGGCGCGATTCCCGAAACCCTGATGGAAAGCGAGTTTTTCGGCT
ATCGCAAGGGCGCATTTACCGGCGCTAATGAAGACCGCGATGGTTTTTTCCAGGCTGCGCATGGTGGCACGCTATTTCTG
GACGAAGTGGCCGATTTGCCGCTGGCGATGCAGGTGAAATTGCTGCGCGTGATTCAGGAGCGCAAAGTGCGGCAGGTGGG
CGGTGTGGCCGAAGTGGACGTCGATGTACGCATTATCTCGGCCACGCACCAGAATCTGAGCCGTTGCGTCGAGGCAGGCA
AATTCAGACAAGATTTGTATTACCGGCTCAATGTGATCGAGCTGAAAATGCCGCCGCTGCGCGAAATGGGCGAAGATGTC
TTGCTGATTGCGCAAGCGGTGCTCAAAAAAATCGCGCAGCGCCACAATATGGACGAGCCCGTGCTGCAGTCCGACGCGCT
CGTTGCATTGCGCCGTTATGATTTTCCCGGCAATGTCCGCGAGCTGGAAAACCTGCTGGAACGCGCATTGGCGCTCTCCG
ATGGTATGCATATTTATGCTGAAGACCTGCATATTCAGCACTCCACCGCTGATAAGGCCGAGGCGCAGGCGGCGAATCTG
GGTGACACTTATCCCTTGCAGGATTATCTGGATCGCGTGGAAAAAGCTGCGATTCTGGCTGCGCTGGATAAAACCAATTT
CAACCGCACCCAGGCGGCCAAATTGTTGGGCATTACTTTTCGCAGCATGCGTTATCGCCTTGATCGGCTCGGTATTTGTC
AGGAAGGGGAGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-120)

Bacterial regulatory protein, Fis family (HTH_8)

(410-449)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.111

96.725

0.552
  pilR Acinetobacter baumannii strain A118

47.097

100

0.478
  luxO Vibrio cholerae strain A1552

36.726

98.69

0.362

Multiple sequence alignment