Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABHN08_RS19570 Genome accession   NZ_CP157354
Coordinates   4313537..4314883 (+) Length   448 a.a.
NCBI ID   WP_071173637.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain GY-AP11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4308537..4319883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHN08_RS19545 (ABHN08_19545) pgeF 4308752..4309474 (-) 723 WP_348970151.1 peptidoglycan editing factor PgeF -
  ABHN08_RS19550 (ABHN08_19550) rluD 4309471..4310433 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABHN08_RS19555 (ABHN08_19555) - 4310585..4311601 (+) 1017 WP_016773139.1 outer membrane protein assembly factor BamD -
  ABHN08_RS19560 (ABHN08_19560) - 4311728..4311961 (+) 234 WP_016773138.1 PP0621 family protein -
  ABHN08_RS19565 (ABHN08_19565) pilS 4311951..4313540 (+) 1590 WP_348970152.1 sensor histidine kinase Regulator
  ABHN08_RS19570 (ABHN08_19570) pilR 4313537..4314883 (+) 1347 WP_071173637.1 sigma-54-dependent transcriptional regulator Regulator
  ABHN08_RS19575 (ABHN08_19575) thiO 4314976..4316076 (-) 1101 WP_348970153.1 glycine oxidase ThiO -
  ABHN08_RS19580 (ABHN08_19580) - 4316134..4316535 (-) 402 WP_016773135.1 type IV pilin protein -
  ABHN08_RS19585 (ABHN08_19585) - 4316551..4319640 (-) 3090 WP_348970154.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50146.42 Da        Isoelectric Point: 6.3600

>NTDB_id=1006216 ABHN08_RS19570 WP_071173637.1 4313537..4314883(+) (pilR) [Pseudomonas atacamensis strain GY-AP11]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGPSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQVDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=1006216 ABHN08_RS19570 WP_071173637.1 4313537..4314883(+) (pilR) [Pseudomonas atacamensis strain GY-AP11]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGCAATCTGGGCGAAGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCACACCTGCCG
GTGGCGATGATCACGGCGTACGGAAGCCTGGAAACTGCGATCAATGCGCTGAAGGCCGGGGCGTTCGACTTCCTCACCAA
ACCGGTGGAACTGCCGCGCTTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCCCGAGCACCGCAA
TCGAGCGACGCTTGCTGGGCGATTCGCCGCCGATGGCCAATCTGCGCAAGCAGATCGACAAGCTCGCACGCAGTCAGGCA
CCGGTCTACATCAGCGGCGAATCCGGTAGCGGCAAAGAACTGGTCGCGCGTCTGATCCACGAACAAGGTCCGCGCGCCAG
CCAGCCTTTTGTGCCGGTGAACTGCGGGGCAATTCCATCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GTTTCACTGGAGCCGTCGAAGACAAGCCGGGGCTGTTTCAAGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GATTTGCCACTGTCGATGCAAGTGAAACTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTGGACGTGCGCATCCTTTGCGCAACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGTGTGCCGTCCCTGCGCGAACGCCGTGACGACATTGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAATGTGCGCGAACTGGAGAACGTCCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAAGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCAGATTTGACGCAGGTCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCAATGCGCTATCGGCTGAAGAAGTTGGGCCTGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

98.884

0.772
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507
  luxO Vibrio cholerae strain A1552

39.853

91.295

0.364

Multiple sequence alignment