Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABHN08_RS19565 Genome accession   NZ_CP157354
Coordinates   4311951..4313540 (+) Length   529 a.a.
NCBI ID   WP_348970152.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain GY-AP11     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4306951..4318540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHN08_RS19545 (ABHN08_19545) pgeF 4308752..4309474 (-) 723 WP_348970151.1 peptidoglycan editing factor PgeF -
  ABHN08_RS19550 (ABHN08_19550) rluD 4309471..4310433 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABHN08_RS19555 (ABHN08_19555) - 4310585..4311601 (+) 1017 WP_016773139.1 outer membrane protein assembly factor BamD -
  ABHN08_RS19560 (ABHN08_19560) - 4311728..4311961 (+) 234 WP_016773138.1 PP0621 family protein -
  ABHN08_RS19565 (ABHN08_19565) pilS 4311951..4313540 (+) 1590 WP_348970152.1 sensor histidine kinase Regulator
  ABHN08_RS19570 (ABHN08_19570) pilR 4313537..4314883 (+) 1347 WP_071173637.1 sigma-54-dependent transcriptional regulator Regulator
  ABHN08_RS19575 (ABHN08_19575) thiO 4314976..4316076 (-) 1101 WP_348970153.1 glycine oxidase ThiO -
  ABHN08_RS19580 (ABHN08_19580) - 4316134..4316535 (-) 402 WP_016773135.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58629.36 Da        Isoelectric Point: 6.9654

>NTDB_id=1006215 ABHN08_RS19565 WP_348970152.1 4311951..4313540(+) (pilS) [Pseudomonas atacamensis strain GY-AP11]
MVAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSRLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGEIREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQADVWLALFVDPESQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1006215 ABHN08_RS19565 WP_348970152.1 4311951..4313540(+) (pilS) [Pseudomonas atacamensis strain GY-AP11]
GTGGTCGCTGAGGCCGCCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTTTAAGTGT
CGGCATCACTCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATCATCAACATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCGCTTGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCGGGCGGCGTGGCCAGTGCGCTGGGCAATCT
GCTGGTGGTCTCGGTGGCAATCAGCAACACCCTGCTACGCCGACGCATCGGCCTGCTGATTGCCGCCATCGCGGCGATCG
GCATTGTCGGCCTGAGCTTTCTGCTGGGGCTCAGCCGCCCCTTGAGCGCCAACGCCTACTTGCAAGCCGGCACCCTCGGT
GCGCTGTGCTTTGCCGCATCGCTGCTGGTGCAAGGGTTGATCCGCCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAAGTGGTCAGCCTGGAGGCGCTGAACGCGTTGATCCTGCAACGCATGCGCACGGGGATTCTGGTGCTCGACG
AGCAACGTCGGGTGCAACTGGCCAATCACAGCGCGCAGAGTCTGCTCGGCCATAGTCGCCTGCAAGGTCATTTGATCGAC
GAGTATTCCCCCGCATTGGTCGAGCGTCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAGCCCAGTTTCATCGCCCTTGAGCAGAGCCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAGGCGCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCGCTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAATCCGCGAGCAGGCCAATGAGCGC
CAGCACATCCATCTGCGGATCAATTCCGGCGATTTCACCACGCTGATGGACCCCAACCAGTTGCGGCAGATTCTCGACAA
TCTGATACGCAATGCCTGGCGTCACAGTGCGCAACTGCACGAGCAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCCG
AAAGCCAATTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGATGAACAGGCGCATCTGTTTGAGCCG
TTCTTCACTACCAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599

Multiple sequence alignment