Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUD59_RS06540 Genome accession   NZ_AP027292
Coordinates   1422366..1422905 (-) Length   179 a.a.
NCBI ID   WP_286240341.1    Uniprot ID   -
Organism   Neptuniibacter halophilus strain LMG 25378     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1417366..1427905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD59_RS06515 glp 1417905..1419122 (-) 1218 WP_286240335.1 gephyrin-like molybdotransferase Glp -
  QUD59_RS06520 moaB 1419125..1419667 (-) 543 WP_286240336.1 molybdenum cofactor biosynthesis protein B -
  QUD59_RS06525 moaA 1419729..1420733 (-) 1005 WP_286240337.1 GTP 3',8-cyclase MoaA -
  QUD59_RS06530 - 1420851..1421228 (+) 378 WP_286240338.1 SirB2 family protein -
  QUD59_RS06535 rfbD 1421234..1422088 (-) 855 WP_286240339.1 dTDP-4-dehydrorhamnose reductase -
  QUD59_RS06540 ssb 1422366..1422905 (-) 540 WP_286240341.1 single-stranded DNA-binding protein Machinery gene
  QUD59_RS06545 uvrA 1423101..1425929 (+) 2829 WP_286240343.1 excinuclease ABC subunit UvrA -
  QUD59_RS06550 rplQ 1426068..1426457 (-) 390 WP_286240344.1 50S ribosomal protein L17 -
  QUD59_RS06555 rpoA 1426497..1427501 (-) 1005 WP_286240346.1 DNA-directed RNA polymerase subunit alpha -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19863.81 Da        Isoelectric Point: 4.9562

>NTDB_id=100614 QUD59_RS06540 WP_286240341.1 1422366..1422905(-) (ssb) [Neptuniibacter halophilus strain LMG 25378]
MARGVNKVILVGNLGGDPEVRYMPNGNAVTNVTIATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYMRKGGKVYVE
GSLRTRKWQDQSGQDRYTTEIVASEMQLLDSRGGDGGGYQPQQQGGYSQQAPQQQAAPQQAPQQQYAPQQAPQQRPAPQQ
APAPQPAPGFDDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=100614 QUD59_RS06540 WP_286240341.1 1422366..1422905(-) (ssb) [Neptuniibacter halophilus strain LMG 25378]
ATGGCACGTGGTGTTAACAAAGTAATTCTTGTGGGCAATCTGGGTGGTGACCCTGAAGTTCGGTATATGCCTAATGGCAA
TGCGGTAACCAACGTTACCATCGCAACCTCTGAATCCTGGAAAGATAAGCAGACCGGTCAGCAGCAAGAGCGTACTGAGT
GGCACCGGGTTGTCTTTTTTAATCGTCTGGCGGAGATCGCCGGTGAATACATGCGTAAAGGCGGTAAAGTCTACGTCGAA
GGTTCATTGCGCACCCGTAAGTGGCAGGATCAGAGCGGACAGGATCGCTACACAACCGAGATCGTAGCCAGTGAAATGCA
GCTGCTCGACAGCCGCGGTGGCGATGGTGGTGGTTATCAGCCGCAGCAGCAGGGGGGGTACTCGCAGCAGGCTCCACAGC
AGCAGGCAGCCCCGCAACAGGCACCTCAGCAGCAGTATGCACCGCAGCAGGCGCCGCAACAGCGTCCCGCTCCCCAGCAG
GCGCCTGCACCACAGCCTGCACCGGGCTTTGACGATTTCGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.791

100

0.598
  ssb Glaesserella parasuis strain SC1401

58.242

100

0.592
  ssb Neisseria gonorrhoeae MS11

50.282

98.883

0.497
  ssb Neisseria meningitidis MC58

49.718

98.883

0.492

Multiple sequence alignment