Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QUD59_RS03740 Genome accession   NZ_AP027292
Coordinates   805669..806517 (+) Length   282 a.a.
NCBI ID   WP_286239685.1    Uniprot ID   -
Organism   Neptuniibacter halophilus strain LMG 25378     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 800669..811517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD59_RS03715 nadC 800673..801521 (+) 849 WP_286239677.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QUD59_RS03720 - 801607..801948 (-) 342 WP_286239679.1 hypothetical protein -
  QUD59_RS03725 - 802057..802500 (-) 444 WP_286239680.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QUD59_RS03730 pilB 802704..804416 (+) 1713 WP_286239682.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QUD59_RS03735 pilC 804433..805653 (+) 1221 WP_286239683.1 type II secretion system F family protein Machinery gene
  QUD59_RS03740 pilD 805669..806517 (+) 849 WP_286239685.1 A24 family peptidase Machinery gene
  QUD59_RS03745 coaE 806520..807125 (+) 606 WP_350227791.1 dephospho-CoA kinase -
  QUD59_RS03750 yacG 807122..807349 (+) 228 WP_286239686.1 DNA gyrase inhibitor YacG -
  QUD59_RS03755 - 807350..808294 (-) 945 WP_286239687.1 Nudix family hydrolase -
  QUD59_RS03760 argJ 808294..809514 (-) 1221 WP_286239688.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31143.13 Da        Isoelectric Point: 7.2362

>NTDB_id=100612 QUD59_RS03740 WP_286239685.1 805669..806517(+) (pilD) [Neptuniibacter halophilus strain LMG 25378]
MPLLITDPLWAAGLIFLLSLCVGSFLNVVIHRLPIIMEREWALMCSPEQPLTPATYNLSLPASSCPGCGHKIRWYENIPL
LSYAWLRGRCSGCRTPISLRYPFVELLTGCSSAYVVYLFGLNPAGLTLVLLTWGLICLLFIDLDHQLLPDRITLPLLWLG
LLANSFNLFTSLENAVYGAMAGYLTLWGVYWAFKLLTGKEGMGYGDFKLLAALGAWAGIGQLPFIILMSSLVGAIFGIGM
MLLRNHQSQTPIPFGPYLAIAGWIALLWGDHITSLYLQFLAV

Nucleotide


Download         Length: 849 bp        

>NTDB_id=100612 QUD59_RS03740 WP_286239685.1 805669..806517(+) (pilD) [Neptuniibacter halophilus strain LMG 25378]
ATGCCTCTACTAATAACAGACCCTCTCTGGGCAGCAGGCCTGATTTTCCTGCTCTCTCTCTGCGTGGGTAGTTTCCTGAA
TGTGGTGATCCACCGTCTGCCAATTATCATGGAACGGGAGTGGGCATTGATGTGCTCGCCGGAGCAGCCACTCACGCCTG
CAACCTATAACCTGTCGCTCCCTGCATCATCCTGCCCGGGGTGTGGACATAAGATCCGCTGGTATGAAAATATCCCCCTA
CTCAGTTACGCCTGGCTGAGAGGCCGCTGCTCCGGCTGCAGGACGCCGATCTCTCTGCGCTACCCCTTTGTCGAATTGCT
GACCGGGTGCAGCTCTGCGTATGTGGTTTACCTGTTCGGGCTCAACCCTGCAGGGCTCACTCTGGTGCTGCTGACATGGG
GGCTGATCTGTTTGCTCTTTATCGATCTGGATCACCAGCTTCTGCCCGACCGAATCACTCTGCCCCTGCTCTGGCTGGGC
TTATTAGCCAACAGCTTTAACCTGTTTACTTCTCTTGAGAATGCGGTTTACGGGGCTATGGCGGGTTATTTGACCCTTTG
GGGTGTTTACTGGGCGTTTAAACTGCTCACCGGTAAGGAGGGCATGGGTTACGGAGATTTTAAACTCCTGGCTGCGCTGG
GCGCCTGGGCGGGTATTGGCCAACTGCCCTTTATTATCCTGATGAGTTCACTGGTCGGAGCCATCTTCGGTATCGGCATG
ATGCTGTTACGTAACCACCAAAGCCAAACCCCGATTCCATTTGGCCCCTACCTGGCCATCGCCGGATGGATCGCGCTGCT
CTGGGGCGACCATATCACTAGTCTCTATCTTCAGTTTCTGGCGGTGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(130-238)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

57.519

94.326

0.543
  pilD Acinetobacter baumannii D1279779

56.767

94.326

0.535
  pilD Vibrio cholerae strain A1552

55.056

94.681

0.521
  pilD Vibrio campbellii strain DS40M4

53.933

94.681

0.511
  pilD Neisseria gonorrhoeae MS11

47.94

94.681

0.454

Multiple sequence alignment