Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEC/celB   Type   Machinery gene
Locus tag   FGL18_RS06965 Genome accession   NZ_LR594046
Coordinates   1443407..1445650 (-) Length   747 a.a.
NCBI ID   WP_138126021.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain NCTC6403     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1438407..1450650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL18_RS06945 (NCTC6403_01434) - 1438698..1440146 (-) 1449 WP_138126013.1 IS1182 family transposase -
  FGL18_RS06950 (NCTC6403_01435) - 1440357..1441418 (-) 1062 WP_138126015.1 serine hydrolase -
  FGL18_RS06955 (NCTC6403_01436) sodA 1441585..1442190 (-) 606 WP_138126017.1 superoxide dismutase SodA -
  FGL18_RS06960 (NCTC6403_01437) holA 1442280..1443326 (-) 1047 WP_138126019.1 DNA polymerase III subunit delta -
  FGL18_RS06965 (NCTC6403_01438) comEC/celB 1443407..1445650 (-) 2244 WP_138126021.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FGL18_RS06970 (NCTC6403_01439) comEA/celA/cilE 1445631..1446293 (-) 663 WP_138126023.1 helix-hairpin-helix domain-containing protein Machinery gene
  FGL18_RS06975 (NCTC6403_01440) tnpA 1446734..1447207 (-) 474 WP_070001343.1 IS200/IS605 family transposase -
  FGL18_RS06980 (NCTC6403_01441) - 1447438..1448178 (-) 741 WP_172601443.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  FGL18_RS06985 (NCTC6403_01442) - 1448296..1449072 (+) 777 WP_111717937.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FGL18_RS06990 (NCTC6403_01443) - 1449062..1449340 (+) 279 WP_046176932.1 GIY-YIG nuclease family protein -

Sequence


Protein


Download         Length: 747 a.a.        Molecular weight: 85196.74 Da        Isoelectric Point: 9.3972

>NTDB_id=1005789 FGL18_RS06965 WP_138126021.1 1443407..1445650(-) (comEC/celB) [Streptococcus dysgalactiae strain NCTC6403]
MNYRWTKWSPLPPIQLAFLVMALYYQIYCPSWLTCLLSSCLGMLLLKQFPQKTLCKVVMILALFAAVFVYRKHQLRQQLE
TQPLQVSQVALVPDSIRINGDQLAVIGRHGNHSYQLFYRFKHQTEARFFQKEYRWIVMHAKIVLDKAETSRNFRGFNYQS
FLAYQGIYRIGKVEQVEQLEVVSPKSVGDYLSSLRRQAIVHCQQSFPKPMSHYLTGLLFGYLDKSFGEMTDYYSQLGIIH
LFALSGMQVGFFLTCFRRGLTLLAIPLEWIKWIELPFACLYAALTGYSISVIRSLLQAQLGHLGIKGLDNLACAFLLVLL
WDAHALMTVGGVLTFSYAFMLTVITFEELSGVKKHFVQVVTVSLGMLPFLLFYFASFNPMSMVLTGLLSYLFDVLILPLL
CLVFCLSPLITLSGCNYLFLFLEKVIQFLGNTLNASLVFGSPTSWHLLILVISFAILYDHRQIRQRVITCGLVIGLTLLS
VKYPLTNEVTFIDIGQGDSILVRDWTGKNLLIDVGGRLSFSSKEQWRQGHQTSNAQKTLIPYLKSRGIHTIDQLLVTHAD
TDHMGDIEVVAKAIRIKEILTSQGSLSQPSFVRRLRRLKCHVRVLAAGDQLPIMGSVLQVLYPWQLGNGKNNDSLVLYGR
LLNQTFLFTGDLEKEGENEIIERYPQLRVDYLKAGHHGSNTSSSAAFLDHIQPKVAFISVGKNNRYQHPHRETLTRLEDR
EISYYRTDIQGAVRLTGWLNWHIETVR

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=1005789 FGL18_RS06965 WP_138126021.1 1443407..1445650(-) (comEC/celB) [Streptococcus dysgalactiae strain NCTC6403]
ATGAACTATCGTTGGACTAAGTGGTCTCCCTTGCCTCCCATTCAACTAGCCTTTTTGGTAATGGCTCTTTATTATCAGAT
CTATTGTCCTAGCTGGTTGACTTGCTTACTTAGCAGTTGTTTAGGAATGTTACTATTGAAGCAGTTTCCTCAAAAGACCC
TCTGTAAGGTTGTTATGATTCTGGCCTTATTTGCTGCTGTCTTTGTTTATCGGAAACATCAGTTGAGACAGCAATTGGAA
ACACAACCTTTACAAGTGTCTCAGGTAGCATTGGTTCCGGATAGTATTCGAATTAATGGAGATCAATTAGCTGTTATTGG
GCGTCACGGTAATCATTCTTATCAGTTGTTTTATCGTTTTAAACATCAAACGGAAGCCCGATTTTTCCAAAAAGAGTACC
GTTGGATAGTGATGCATGCCAAAATAGTATTGGACAAGGCTGAGACTTCCCGAAATTTTAGAGGATTTAATTACCAATCT
TTTTTAGCCTATCAGGGAATTTACAGGATAGGAAAAGTGGAACAAGTAGAGCAGCTTGAAGTGGTCTCACCAAAGTCAGT
AGGTGATTATTTATCTTCTTTGAGGCGACAGGCTATTGTCCATTGCCAACAGTCCTTTCCAAAGCCTATGTCTCATTATT
TGACGGGACTCCTTTTCGGCTATTTGGATAAGTCCTTTGGTGAGATGACAGATTATTATAGTCAGCTTGGTATCATTCAT
CTTTTTGCCCTCTCAGGGATGCAGGTTGGCTTCTTTTTAACCTGTTTTAGAAGAGGTTTGACGCTATTAGCTATTCCTCT
CGAATGGATTAAATGGATAGAGCTTCCCTTTGCCTGTCTATATGCTGCGCTGACAGGTTACAGTATTTCTGTTATTCGAA
GCCTTCTGCAGGCCCAATTAGGTCATCTAGGTATAAAAGGCTTAGATAATCTGGCTTGCGCTTTCTTACTTGTTCTTTTA
TGGGATGCTCATGCTTTGATGACTGTTGGTGGAGTACTAACATTTAGCTATGCGTTTATGTTAACTGTTATCACTTTTGA
GGAGTTATCGGGAGTTAAAAAGCATTTCGTTCAGGTCGTCACCGTTTCTTTAGGAATGTTACCTTTCTTGCTCTTTTATT
TTGCTAGTTTTAACCCCATGTCAATGGTATTAACAGGGCTTTTATCTTATCTCTTCGATGTTTTGATTTTGCCTCTTCTT
TGCTTGGTTTTCTGTTTGTCTCCTTTGATAACTCTCTCAGGATGTAATTATCTCTTTCTTTTCTTAGAAAAAGTCATTCA
ATTTCTTGGTAATACCCTCAATGCCTCCCTTGTTTTTGGAAGTCCGACCAGTTGGCACTTGCTTATCCTGGTGATTAGCT
TCGCTATTCTTTATGACCATCGGCAGATACGACAAAGAGTTATCACTTGCGGCTTGGTCATAGGCCTGACGCTTTTATCT
GTTAAATATCCTTTGACCAATGAAGTGACCTTTATCGACATTGGCCAGGGTGATAGTATTTTAGTGAGGGATTGGACAGG
AAAAAATCTCTTAATAGATGTAGGTGGGCGCCTTTCCTTTTCTTCAAAAGAGCAGTGGCGACAGGGGCACCAGACATCGA
ATGCTCAGAAAACCTTAATTCCTTACTTAAAAAGTAGAGGCATTCACACCATTGACCAATTACTAGTGACTCATGCGGAT
ACTGATCATATGGGGGATATAGAGGTGGTTGCCAAAGCTATTCGGATAAAGGAGATTTTGACTAGCCAAGGTAGTTTAAG
CCAGCCGAGCTTTGTTAGGCGGTTAAGGCGTTTAAAATGTCACGTTAGGGTTTTAGCAGCTGGAGACCAATTGCCTATTA
TGGGAAGTGTCTTACAGGTGCTCTATCCTTGGCAGTTAGGGAACGGGAAAAATAATGATTCTCTGGTTCTTTATGGTAGG
CTCCTCAATCAAACTTTTCTATTTACAGGTGATTTGGAAAAAGAGGGGGAAAACGAGATCATAGAACGTTATCCTCAACT
AAGAGTAGATTATTTAAAAGCAGGTCACCATGGATCAAATACCTCTTCTAGTGCAGCTTTTTTAGACCATATTCAGCCTA
AAGTGGCCTTTATTTCTGTTGGAAAAAATAACCGTTATCAGCATCCTCACAGAGAAACCCTAACCCGTTTGGAGGATAGG
GAAATTTCTTATTATCGCACGGATATTCAAGGAGCTGTTCGGTTGACAGGATGGCTAAATTGGCATATTGAGACTGTTCG
TTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

45.772

99.732

0.456

  comEC/celB Streptococcus mitis NCTC 12261

45.71

99.866

0.456

  comEC/celB Streptococcus pneumoniae TIGR4

45.187

100

0.452

  comEC/celB Streptococcus pneumoniae Rx1

44.92

100

0.45

  comEC/celB Streptococcus pneumoniae D39

44.92

100

0.45

  comEC/celB Streptococcus pneumoniae R6

44.92

100

0.45

  comEC Lactococcus lactis subsp. cremoris KW2

41.622

99.063

0.412