Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   FGL18_RS00735 Genome accession   NZ_LR594046
Coordinates   119774..120202 (+) Length   142 a.a.
NCBI ID   WP_256867133.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain NCTC6403     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 114774..125202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL18_RS00715 (NCTC6403_00145) - 117069..117434 (+) 366 WP_003055257.1 DUF1033 family protein -
  FGL18_RS00720 (NCTC6403_00146) comGA 117563..118504 (+) 942 WP_138124405.1 competence type IV pilus ATPase ComGA Machinery gene
  FGL18_RS00725 (NCTC6403_00147) comGB 118440..119471 (+) 1032 WP_138126921.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGL18_RS00730 (NCTC6403_00148) comGC 119473..119799 (+) 327 WP_138124408.1 competence type IV pilus major pilin ComGC Machinery gene
  FGL18_RS00735 (NCTC6403_00149) comGD 119774..120202 (+) 429 WP_256867133.1 competence type IV pilus minor pilin ComGD Machinery gene
  FGL18_RS00740 (NCTC6403_00150) comGE 120210..120455 (+) 246 WP_242002881.1 competence type IV pilus minor pilin ComGE Machinery gene
  FGL18_RS00745 (NCTC6403_00151) comGF 120436..120876 (+) 441 WP_138124417.1 competence type IV pilus minor pilin ComGF Machinery gene
  FGL18_RS00750 (NCTC6403_00152) comGG 120854..121228 (+) 375 WP_138124420.1 competence type IV pilus minor pilin ComGG -
  FGL18_RS00755 (NCTC6403_00153) comGH 121291..122244 (+) 954 WP_138124423.1 class I SAM-dependent methyltransferase Machinery gene
  FGL18_RS00760 (NCTC6403_00154) - 122303..123499 (+) 1197 WP_084916957.1 acetate kinase -
  FGL18_RS00765 (NCTC6403_00155) - 123804..124010 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  FGL18_RS00770 (NCTC6403_00156) - 124113..124793 (+) 681 WP_138124426.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16416.87 Da        Isoelectric Point: 9.9660

>NTDB_id=1005735 FGL18_RS00735 WP_256867133.1 119774..120202(+) (comGD) [Streptococcus dysgalactiae strain NCTC6403]
MRLKNCNLKAFTMLESLLTLSVTSFIILGLSVPVTSSYRRVQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAA
EESLTIPDSIRVKNSQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1005735 FGL18_RS00735 WP_256867133.1 119774..120202(+) (comGD) [Streptococcus dysgalactiae strain NCTC6403]
ATGAGACTCAAAAACTGCAACCTTAAAGCTTTCACAATGCTTGAAAGCTTATTAACGCTATCAGTAACGAGTTTTATTAT
CTTGGGGTTATCTGTGCCTGTGACAAGTAGTTATCGAAGGGTTCAGGAACAGCTGTTTTTCACTCGTTTTGAGCACTTTT
ATCGTCACCAACAAAAGTTGGCTATTTTGGAACATGATCAACGAGTTTTGACAATTTCTTCGAAACAAATGCTAGCAGCA
GAGGAGTCGTTAACAATACCTGACTCGATAAGGGTTAAGAATAGCCAGCAATTGGTTATTGATCAAATGGGAGGAAATCA
TTCTTTAGCAAAGATAATATTCGAGACGACTGATCAACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAA
AAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

43.382

95.775

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

38.971

95.775

0.373