Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | UXR76_RS05455 | Genome accession | NZ_CP157306 |
| Coordinates | 1113771..1114241 (+) | Length | 156 a.a. |
| NCBI ID | WP_029549393.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain BSN85 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1103501..1147338 | 1113771..1114241 | within | 0 |
Gene organization within MGE regions
Location: 1103501..1147338
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UXR76_RS05365 (UXR76_005365) | - | 1103501..1104886 (-) | 1386 | WP_000861313.1 | recombinase family protein | - |
| UXR76_RS05370 (UXR76_005370) | - | 1105093..1105215 (-) | 123 | WP_001077637.1 | hypothetical protein | - |
| UXR76_RS05375 (UXR76_005375) | - | 1105236..1105697 (-) | 462 | WP_000525016.1 | hypothetical protein | - |
| UXR76_RS05380 (UXR76_005380) | - | 1105710..1106033 (-) | 324 | WP_001260487.1 | helix-turn-helix domain-containing protein | - |
| UXR76_RS05385 (UXR76_005385) | - | 1106197..1106445 (+) | 249 | WP_000272858.1 | helix-turn-helix domain-containing protein | - |
| UXR76_RS05390 (UXR76_005390) | - | 1106461..1107249 (+) | 789 | WP_001148566.1 | phage antirepressor KilAC domain-containing protein | - |
| UXR76_RS05395 (UXR76_005395) | - | 1107265..1107423 (+) | 159 | WP_000398750.1 | hypothetical protein | - |
| UXR76_RS05400 (UXR76_005400) | - | 1107398..1107727 (-) | 330 | WP_000514498.1 | hypothetical protein | - |
| UXR76_RS05405 (UXR76_005405) | - | 1107784..1108527 (+) | 744 | WP_001148623.1 | phage antirepressor KilAC domain-containing protein | - |
| UXR76_RS05410 (UXR76_005410) | - | 1108703..1108933 (-) | 231 | WP_000395457.1 | hypothetical protein | - |
| UXR76_RS05415 (UXR76_005415) | - | 1108983..1109120 (+) | 138 | WP_000230552.1 | hypothetical protein | - |
| UXR76_RS05420 (UXR76_005420) | - | 1109113..1109283 (+) | 171 | WP_001837399.1 | DUF1270 domain-containing protein | - |
| UXR76_RS05425 (UXR76_005425) | - | 1109264..1109602 (+) | 339 | WP_015990309.1 | transcriptional regulator | - |
| UXR76_RS05430 (UXR76_005430) | - | 1109666..1109926 (+) | 261 | WP_001837398.1 | DUF1108 family protein | - |
| UXR76_RS05435 (UXR76_005435) | - | 1109935..1110198 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| UXR76_RS05440 (UXR76_005440) | - | 1110207..1112150 (+) | 1944 | WP_031896414.1 | AAA family ATPase | - |
| UXR76_RS05445 (UXR76_005445) | - | 1112152..1113072 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| UXR76_RS05450 (UXR76_005450) | - | 1113153..1113770 (+) | 618 | WP_072528355.1 | MBL fold metallo-hydrolase | - |
| UXR76_RS05455 (UXR76_005455) | ssbA | 1113771..1114241 (+) | 471 | WP_029549393.1 | single-stranded DNA-binding protein | Machinery gene |
| UXR76_RS05460 (UXR76_005460) | - | 1114271..1115155 (+) | 885 | WP_271321815.1 | DnaD domain protein | - |
| UXR76_RS05465 (UXR76_005465) | - | 1115162..1115380 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| UXR76_RS05470 (UXR76_005470) | - | 1115389..1115793 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| UXR76_RS05475 (UXR76_005475) | - | 1115806..1116177 (+) | 372 | WP_001651750.1 | SA1788 family PVL leukocidin-associated protein | - |
| UXR76_RS05480 (UXR76_005480) | - | 1116177..1116434 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| UXR76_RS05485 (UXR76_005485) | - | 1116437..1116679 (+) | 243 | WP_000221877.1 | SAV1978 family virulence-associated passenger protein | - |
| UXR76_RS05490 (UXR76_005490) | - | 1116691..1116858 (+) | 168 | WP_001624242.1 | hypothetical protein | - |
| UXR76_RS05495 (UXR76_005495) | - | 1116851..1117102 (+) | 252 | WP_001065092.1 | DUF1024 family protein | - |
| UXR76_RS05500 (UXR76_005500) | - | 1117092..1117274 (+) | 183 | WP_000028422.1 | hypothetical protein | - |
| UXR76_RS05505 (UXR76_005505) | - | 1117267..1117809 (+) | 543 | WP_000185659.1 | dUTP diphosphatase | - |
| UXR76_RS05510 (UXR76_005510) | - | 1117846..1118052 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| UXR76_RS05515 (UXR76_005515) | - | 1118049..1118435 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| UXR76_RS05520 (UXR76_005520) | rinB | 1118432..1118605 (+) | 174 | WP_000595257.1 | transcriptional activator RinB | - |
| UXR76_RS05525 (UXR76_005525) | - | 1118606..1118752 (+) | 147 | WP_000990001.1 | hypothetical protein | - |
| UXR76_RS05530 (UXR76_005530) | - | 1118776..1119198 (+) | 423 | WP_000162696.1 | RinA family phage transcriptional activator | - |
| UXR76_RS05535 (UXR76_005535) | - | 1119385..1119825 (+) | 441 | WP_001003272.1 | terminase small subunit | - |
| UXR76_RS05540 (UXR76_005540) | - | 1119812..1121089 (+) | 1278 | WP_064265441.1 | PBSX family phage terminase large subunit | - |
| UXR76_RS05545 (UXR76_005545) | - | 1121100..1122638 (+) | 1539 | WP_000909977.1 | phage portal protein | - |
| UXR76_RS05550 (UXR76_005550) | - | 1122645..1123640 (+) | 996 | WP_001133044.1 | minor capsid protein | - |
| UXR76_RS05555 (UXR76_005555) | - | 1123713..1123883 (+) | 171 | WP_000072208.1 | hypothetical protein | - |
| UXR76_RS05560 (UXR76_005560) | - | 1123911..1123998 (+) | 88 | Protein_1088 | hypothetical protein | - |
| UXR76_RS05565 (UXR76_005565) | - | 1123992..1124612 (+) | 621 | WP_064134212.1 | DUF4355 domain-containing protein | - |
| UXR76_RS05570 (UXR76_005570) | - | 1124626..1125600 (+) | 975 | WP_000438513.1 | phage major capsid protein | - |
| UXR76_RS05575 (UXR76_005575) | - | 1125622..1125909 (+) | 288 | WP_001114085.1 | hypothetical protein | - |
| UXR76_RS05580 (UXR76_005580) | - | 1125918..1126250 (+) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| UXR76_RS05585 (UXR76_005585) | - | 1126247..1126549 (+) | 303 | WP_001268312.1 | hypothetical protein | - |
| UXR76_RS05590 (UXR76_005590) | - | 1126549..1126896 (+) | 348 | WP_001017815.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| UXR76_RS05595 (UXR76_005595) | - | 1126908..1127291 (+) | 384 | WP_000188648.1 | hypothetical protein | - |
| UXR76_RS05600 (UXR76_005600) | - | 1127310..1127891 (+) | 582 | WP_000002577.1 | phage major tail protein, TP901-1 family | - |
| UXR76_RS05605 (UXR76_005605) | - | 1127953..1128318 (+) | 366 | WP_001100161.1 | tail assembly chaperone | - |
| UXR76_RS05610 (UXR76_005610) | - | 1128348..1128692 (+) | 345 | WP_000105584.1 | hypothetical protein | - |
| UXR76_RS05615 (UXR76_005615) | - | 1128709..1132173 (+) | 3465 | WP_064265435.1 | hypothetical protein | - |
| UXR76_RS05620 (UXR76_005620) | - | 1132186..1133133 (+) | 948 | WP_031794375.1 | phage tail family protein | - |
| UXR76_RS05625 (UXR76_005625) | - | 1133142..1135043 (+) | 1902 | WP_000152714.1 | SGNH/GDSL hydrolase family protein | - |
| UXR76_RS05630 (UXR76_005630) | - | 1135058..1136968 (+) | 1911 | WP_209187600.1 | hypothetical protein | - |
| UXR76_RS05635 (UXR76_005635) | - | 1136968..1138792 (+) | 1825 | Protein_1103 | phage baseplate upper protein | - |
| UXR76_RS05640 (UXR76_005640) | - | 1138792..1139169 (+) | 378 | WP_000705910.1 | DUF2977 domain-containing protein | - |
| UXR76_RS05645 (UXR76_005645) | - | 1139173..1139346 (+) | 174 | WP_000782200.1 | XkdX family protein | - |
| UXR76_RS05650 (UXR76_005650) | - | 1139386..1139685 (+) | 300 | WP_000466767.1 | DUF2951 domain-containing protein | - |
| UXR76_RS05655 (UXR76_005655) | - | 1139822..1141720 (+) | 1899 | WP_031868349.1 | glucosaminidase domain-containing protein | - |
| UXR76_RS05660 (UXR76_005660) | - | 1141733..1142971 (+) | 1239 | WP_001665438.1 | BppU family phage baseplate upper protein | - |
| UXR76_RS05665 (UXR76_005665) | - | 1142977..1143372 (+) | 396 | WP_001611616.1 | hypothetical protein | - |
| UXR76_RS05670 (UXR76_005670) | - | 1143428..1143865 (+) | 438 | WP_000354132.1 | phage holin | - |
| UXR76_RS05675 (UXR76_005675) | - | 1143846..1145291 (+) | 1446 | WP_209187598.1 | SH3 domain-containing protein | - |
| UXR76_RS05680 (UXR76_005680) | - | 1145800..1146594 (+) | 795 | WP_000238963.1 | HipA family kinase | - |
| UXR76_RS05685 (UXR76_005685) | - | 1146601..1147338 (+) | 738 | WP_000278830.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17654.38 Da Isoelectric Point: 4.6228
>NTDB_id=1005717 UXR76_RS05455 WP_029549393.1 1113771..1114241(+) (ssbA) [Staphylococcus aureus strain BSN85]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFVNCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNTNDSQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANDPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1005717 UXR76_RS05455 WP_029549393.1 1113771..1114241(+) (ssbA) [Staphylococcus aureus strain BSN85]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCTTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTGTTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTTTTAGAACCAAAGAA
CACAAATGACTCTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTCGCAAATGCGAATGATCCTATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.017 |
100 |
0.692 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.571 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.768 |
100 |
0.372 |