Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | UXR76_RS01835 | Genome accession | NZ_CP157306 |
| Coordinates | 411275..411778 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain BSN85 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 407215..433037 | 411275..411778 | within | 0 |
Gene organization within MGE regions
Location: 407215..433037
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UXR76_RS01805 (UXR76_001805) | - | 407215..408060 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| UXR76_RS01810 (UXR76_001810) | - | 408214..409095 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| UXR76_RS01815 (UXR76_001815) | - | 409125..409328 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| UXR76_RS01820 (UXR76_001820) | ychF | 409340..410437 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| UXR76_RS01825 (UXR76_001825) | - | 410523..410714 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| UXR76_RS01830 (UXR76_001830) | rpsF | 410958..411254 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| UXR76_RS01835 (UXR76_001835) | ssbA | 411275..411778 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| UXR76_RS01840 (UXR76_001840) | rpsR | 411830..412072 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| UXR76_RS01845 (UXR76_001845) | - | 412311..413210 (-) | 900 | WP_001797289.1 | Abi family protein | - |
| UXR76_RS01850 (UXR76_001850) | - | 413212..414426 (-) | 1215 | WP_000270134.1 | site-specific integrase | - |
| UXR76_RS01855 (UXR76_001855) | - | 414882..415577 (-) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| UXR76_RS01860 (UXR76_001860) | - | 415721..415933 (+) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| UXR76_RS01865 (UXR76_001865) | - | 415934..416206 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| UXR76_RS01870 (UXR76_001870) | - | 416218..416364 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| UXR76_RS01875 (UXR76_001875) | tscA | 416357..416566 (+) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| UXR76_RS01880 (UXR76_001880) | tscT | 416569..416886 (+) | 318 | WP_001103938.1 | type II toxin-antitoxin system toxin TscT | - |
| UXR76_RS01885 (UXR76_001885) | - | 416938..418551 (+) | 1614 | WP_000344763.1 | hypothetical protein | - |
| UXR76_RS01890 (UXR76_001890) | - | 418722..419525 (+) | 804 | WP_000148371.1 | bifunctional DNA primase/polymerase | - |
| UXR76_RS01895 (UXR76_001895) | - | 419512..419784 (+) | 273 | WP_336469764.1 | pathogenicity island protein | - |
| UXR76_RS01900 (UXR76_001900) | - | 419786..420427 (+) | 642 | WP_001019289.1 | hypothetical protein | - |
| UXR76_RS01905 (UXR76_001905) | - | 420775..421116 (+) | 342 | WP_001190615.1 | hypothetical protein | - |
| UXR76_RS01910 (UXR76_001910) | - | 421128..421706 (+) | 579 | WP_000846283.1 | hypothetical protein | - |
| UXR76_RS01915 (UXR76_001915) | - | 421724..421942 (+) | 219 | WP_000448772.1 | capsid morphogenesis B protein | - |
| UXR76_RS01920 (UXR76_001920) | - | 421993..422520 (+) | 528 | WP_000771368.1 | spore coat protein | - |
| UXR76_RS01925 (UXR76_001925) | - | 422523..422864 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| UXR76_RS01930 (UXR76_001930) | - | 422861..423430 (+) | 570 | WP_001293075.1 | terminase small subunit | - |
| UXR76_RS01935 (UXR76_001935) | - | 423887..424378 (+) | 492 | WP_000770704.1 | hypothetical protein | - |
| UXR76_RS01940 (UXR76_001940) | - | 424365..424994 (+) | 630 | WP_000742266.1 | hypothetical protein | - |
| UXR76_RS01945 (UXR76_001945) | - | 424999..425940 (+) | 942 | WP_000323493.1 | hypothetical protein | - |
| UXR76_RS01950 (UXR76_001950) | - | 426136..426267 (+) | 132 | WP_000247644.1 | hypothetical protein | - |
| UXR76_RS14360 | - | 426414..426512 (+) | 99 | Protein_389 | hypothetical protein | - |
| UXR76_RS01955 (UXR76_001955) | - | 426773..426925 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| UXR76_RS01960 (UXR76_001960) | - | 426996..427106 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| UXR76_RS01965 (UXR76_001965) | - | 427108..427293 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| UXR76_RS01970 (UXR76_001970) | - | 428089..429027 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| UXR76_RS01975 (UXR76_001975) | - | 429066..429779 (-) | 714 | Protein_394 | tyrosine-type recombinase/integrase | - |
| UXR76_RS01980 (UXR76_001980) | selX | 429985..430596 (+) | 612 | WP_336469765.1 | staphylococcal enterotoxin-like toxin X | - |
| UXR76_RS01985 (UXR76_001985) | - | 430965..431333 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| UXR76_RS01990 (UXR76_001990) | - | 431514..432086 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| UXR76_RS01995 (UXR76_001995) | - | 432223..432486 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| UXR76_RS02000 (UXR76_002000) | - | 432786..433037 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1005707 UXR76_RS01835 WP_000934799.1 411275..411778(+) (ssbA) [Staphylococcus aureus strain BSN85]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1005707 UXR76_RS01835 WP_000934799.1 411275..411778(+) (ssbA) [Staphylococcus aureus strain BSN85]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |