Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   FGL14_RS09580 Genome accession   NZ_LR594045
Coordinates   1895433..1897886 (+) Length   817 a.a.
NCBI ID   WP_110408165.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1890433..1902886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL14_RS09560 (NCTC9413_01977) - 1892846..1893391 (-) 546 WP_015058036.1 CvpA family protein -
  FGL14_RS09565 (NCTC9413_01978) - 1893394..1893702 (-) 309 WP_003052702.1 hypothetical protein -
  FGL14_RS09570 (NCTC9413_01979) rnhC 1893859..1894758 (+) 900 WP_042357991.1 ribonuclease HIII -
  FGL14_RS09575 (NCTC9413_01980) lepB 1894780..1895373 (+) 594 WP_014612577.1 signal peptidase I -
  FGL14_RS09580 (NCTC9413_01981) recD/recD2/recDB 1895433..1897886 (+) 2454 WP_110408165.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FGL14_RS09585 (NCTC9413_01982) - 1897977..1898465 (+) 489 WP_138084032.1 hypothetical protein -
  FGL14_RS09590 (NCTC9413_01983) dinB 1898554..1899651 (-) 1098 WP_138084033.1 DNA polymerase IV -
  FGL14_RS09595 (NCTC9413_01984) pflB 1899860..1902187 (+) 2328 WP_003056840.1 formate C-acetyltransferase -
  FGL14_RS09600 (NCTC9413_01985) - 1902291..1902743 (+) 453 WP_003056842.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 817 a.a.        Molecular weight: 91276.13 Da        Isoelectric Point: 4.5579

>NTDB_id=1005707 FGL14_RS09580 WP_110408165.1 1895433..1897886(+) (recD/recD2/recDB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413]
MEHFFTGTVDRIIFENAANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGELTQHPKYGQQLKLSRYQKVK
PSSSGLVNYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELG
LSNRFAFQAFEKYKEEALDLVKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESVSRGDTYVQAR
QLLDFAITLLEDARQVECDPAAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIAKNISRLLDTPLSQSFSHDTIQTTI
QAVQEDFAITYDQVQQEAIAKALTSKVFLLTGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLAAISSTTQVIIVGDSDQLPSVGPGQVLSDLL
KVNSLPQIALQKIFRQSQESTIVDLADQMRRGILAADFRDKKADRSYFEAQASFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQNLLNPLEGQTEFLFNDTHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILD
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGEFAAFDYAIKNEG
DKRQTYLVERFQEQSDLASSQPNQELKSKEQTSLFSNTAALEDDFQKSSSQSTNSNPTENSQSDNDDFRLTPENYSTIDS
MIGLTESDVALFFQKKS

Nucleotide


Download         Length: 2454 bp        

>NTDB_id=1005707 FGL14_RS09580 WP_110408165.1 1895433..1897886(+) (recD/recD2/recDB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC9413]
ATGGAACACTTTTTTACTGGTACTGTTGACCGCATTATCTTTGAAAATGCAGCTAATTTTTTTAAAATTCTCCTCCTTGC
CATCGAAGACACAGATAGTGATATTGACGACTTTGAAATCATTATCACAGGGACGATGGCTGACATTATTGAAGGAGATG
ACTACACCTTTTGGGGGGAATTGACCCAGCACCCTAAATATGGACAGCAACTCAAACTAAGCCGTTACCAAAAAGTCAAA
CCTAGTTCATCTGGTTTGGTTAATTATTTCTCCAGCGACCATTTTAAGGGGATTGGAAAGAAAACAGCGGAGAAAATCAT
TGCCCTCTATGGCAATAATACTATTGACCATATTTTAGAAGACCCAAGTAAATTAGAAACTATTTCTGGTCTGTCCAAGG
CTAATCGTCAAGCCTTTGTCGCTAAACTGAAATTGAATTATGGCACAGAGCAACTGATTGCTGGTCTCGTCGAACTTGGC
CTTAGCAACCGTTTTGCCTTTCAAGCGTTTGAGAAGTACAAAGAAGAGGCTCTTGACCTTGTTAAAGAAAATCCCTATCA
ATTAGTCGAAGATCTACAAGGTTTTGGGTTTAAGATGGCAGATGCTCTCGCTGAAAACTTAGGGATTGAGAGCGACTCTC
CAAAACGTTTTCGTGCTGCCCTCCTGCACTGCCTCTTGGAAGAATCCGTCAGTCGAGGAGACACTTATGTCCAAGCACGA
CAATTATTAGACTTTGCCATCACACTCCTTGAAGATGCACGTCAAGTAGAATGTGACCCTGCTGCTGTGGCTGAACAACT
AAGCGAGTTAATCATAGAGGGCAAAATCAAAAACAGTGACACCAAATTGTTTGATGCTAGCCTTTATTTTGCTGAAGAGG
GGATTGCTAAGAATATCTCTCGTCTCTTAGATACCCCTTTAAGTCAGTCATTTAGTCATGATACCATCCAAACAACCATC
CAAGCCGTTCAAGAAGACTTTGCTATCACTTATGACCAGGTGCAGCAAGAAGCCATTGCTAAAGCCTTAACCAGCAAGGT
ATTTCTCCTAACAGGTGGTCCCGGAACAGGGAAAACAACTGTTATTCGAGGCATTTTGCAGGCTTACGCGAACCTGCATC
AGATTGATTTGGATAAAAAAGACCTTCCTATCTTGTTAGCAGCTCCAACAGGTCGGGCTGCACGTCGTATGAATGAGTTG
ACTGGACTTCCTAGCGCAACCATCCACAGGCACTTAGGCCTCAACGGCGACAACGATTACCAAGCCATGGAAGATTATCT
AGACTGCGACTTGCTGATTGTCGATGAATTTTCAATGGTGGATACCTGGCTTGCTAACCAATTGTTAGCAGCGATTAGTT
CAACAACTCAAGTAATTATTGTCGGAGATAGTGACCAGCTTCCTTCGGTTGGACCCGGTCAAGTCCTGTCAGATCTTTTA
AAAGTCAATAGCCTGCCCCAAATCGCCTTGCAAAAGATATTTCGTCAATCCCAAGAATCTACTATTGTAGATTTGGCAGA
CCAGATGCGTCGAGGAATCTTAGCTGCTGACTTTCGTGACAAAAAAGCTGACCGTTCTTATTTTGAAGCCCAAGCCTCTT
TCATCCCGGACATGATTCAAAAAATTGTTCTATCTGCTATTAAAAGTGGCATCCCTGCTGAGGAAATTCAAATTTTAGCG
CCTATGTACAAAGGACAGGCTGGCATCAATCATCTTAACCAATTGATGCAAAACCTCCTCAACCCTTTGGAAGGGCAAAC
GGAATTTCTGTTCAATGATACGCATTTTCGTAAAGGTGATAAAGTCTTGCACTTAGTCAACGATGCTCAGTTGAATGTCT
TTAACGGAGATATTGGTTATATTACAGATTTGATTCCTGCTAAATATACCGAATCTAAGCAAGACGAATTAATCTTAGAT
TTTGACGGTAGCGAAGTCACGTACCCTAGAAATGAATGGCTAAAATTAACCTTAGCCTATGCCATGAGCATTCATAAGTC
ACAAGGGAGCGAGTTTCAAGTGGTGATTTTACCCATCACACGCCAAAGCGGCCGACTTTTGCAACGAAATTTAATTTATA
CTGCTATCACCCGTTCTAAAAGTAAGTTGATTATGCTAGGTGAATTTGCAGCCTTTGACTATGCTATTAAAAATGAAGGG
GATAAACGGCAAACTTATTTGGTGGAACGCTTCCAAGAACAATCCGACTTAGCCTCCTCTCAACCTAACCAAGAGCTAAA
ATCAAAAGAGCAGACCTCCCTTTTTTCTAATACGGCAGCCCTTGAGGACGACTTTCAAAAATCTTCCTCTCAATCAACAA
ACTCTAACCCCACTGAGAACTCTCAGTCAGATAATGATGATTTTAGGTTAACACCTGAGAATTATTCGACTATCGATTCG
ATGATAGGGCTTACAGAATCAGATGTTGCCCTCTTTTTCCAGAAAAAATCCTAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

AAA domain (AAA_30)

(331-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.44

92.289

0.392

Multiple sequence alignment