Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUD86_RS08430 Genome accession   NZ_AP027274
Coordinates   1659383..1659838 (-) Length   151 a.a.
NCBI ID   WP_286296631.1    Uniprot ID   -
Organism   Polynucleobacter sp. TUM22923     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1654383..1664838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUD86_RS08415 (TUM22923_16400) ilvA 1656014..1657534 (+) 1521 WP_286296628.1 threonine ammonia-lyase, biosynthetic -
  QUD86_RS08420 (TUM22923_16410) - 1657534..1658457 (+) 924 WP_286296629.1 5'-nucleotidase -
  QUD86_RS08425 (TUM22923_16420) queF 1658495..1659322 (+) 828 WP_286296630.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  QUD86_RS08430 (TUM22923_16430) ssb 1659383..1659838 (-) 456 WP_286296631.1 single-stranded DNA-binding protein Machinery gene
  QUD86_RS08435 (TUM22923_16440) - 1659879..1661057 (-) 1179 WP_286296632.1 MFS transporter -
  QUD86_RS08440 (TUM22923_16450) uvrA 1661095..1663989 (+) 2895 WP_286296634.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16313.19 Da        Isoelectric Point: 6.4829

>NTDB_id=100554 QUD86_RS08430 WP_286296631.1 1659383..1659838(-) (ssb) [Polynucleobacter sp. TUM22923]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTSEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDASGQEKYSTEIVADSMQMLGGKPVGGSEGGGESYARSKPVEHSAPASSNAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=100554 QUD86_RS08430 WP_286296631.1 1659383..1659838(-) (ssb) [Polynucleobacter sp. TUM22923]
ATGGCTTCGGTAAATAAAGTCATCATCGTAGGTAACGTTGGACGTGATCCAGAAACGCGTTATATGCCAAGTGGCGACGC
TGTTACCAACATTTCAGTGGCGACCTCTGATCGTTACAAAGATAAGCAAACTAGCGAGATGAAAGAAACCACAGAATGGC
ACCGCGTTGCGTTCTTTGGCAAGCTTGCTGAGATTGCTGGTCAGTATCTCAAAAAAGGTTCACAGGTTTACGTAGAGGGA
CGCTTACGAACACGTAAATGGACTGATGCTAGTGGTCAAGAAAAATACTCCACTGAAATTGTTGCAGACTCTATGCAGAT
GCTCGGTGGAAAGCCAGTGGGTGGTAGTGAAGGTGGCGGCGAAAGTTATGCCCGCTCAAAGCCTGTAGAGCACTCTGCCC
CGGCATCTTCTAACGCCGCATCGCTGGGCGCAATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.596
  ssb Glaesserella parasuis strain SC1401

46.667

100

0.556
  ssb Neisseria meningitidis MC58

45.977

100

0.53
  ssb Neisseria gonorrhoeae MS11

45.977

100

0.53

Multiple sequence alignment