Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | QUD69_RS06275 | Genome accession | NZ_AP027273 |
| Coordinates | 1368193..1369347 (+) | Length | 384 a.a. |
| NCBI ID | WP_228247097.1 | Uniprot ID | - |
| Organism | Halopseudomonas aestusnigri strain MFKK | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1363193..1374347
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUD69_RS06245 (MFKK_12350) | - | 1363321..1364463 (-) | 1143 | WP_228247102.1 | homoserine O-acetyltransferase | - |
| QUD69_RS06250 (MFKK_12360) | - | 1364590..1364880 (-) | 291 | WP_269688458.1 | DUF167 family protein | - |
| QUD69_RS06255 (MFKK_12370) | - | 1364886..1365476 (-) | 591 | WP_269688459.1 | YggT family protein | - |
| QUD69_RS06260 (MFKK_12380) | proC | 1365490..1366308 (-) | 819 | WP_269688460.1 | pyrroline-5-carboxylate reductase | - |
| QUD69_RS06265 (MFKK_12390) | - | 1366333..1367019 (-) | 687 | WP_269688461.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| QUD69_RS06270 (MFKK_12400) | pilT | 1367097..1368131 (+) | 1035 | WP_088276051.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| QUD69_RS06275 (MFKK_12410) | pilU | 1368193..1369347 (+) | 1155 | WP_228247097.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| QUD69_RS06280 (MFKK_12420) | siaD | 1369367..1370161 (-) | 795 | WP_228247096.1 | biofilm regulation diguanylate cyclase SiaD | - |
| QUD69_RS06285 (MFKK_12430) | siaC | 1370169..1370546 (-) | 378 | WP_228247095.1 | biofilm regulation phosphoprotein SiaC | - |
| QUD69_RS06290 (MFKK_12440) | siaB | 1370569..1371111 (-) | 543 | WP_228247094.1 | biofilm regulation protein kinase SiaB | - |
| QUD69_RS06295 (MFKK_12450) | siaA | 1371140..1373131 (-) | 1992 | WP_228247093.1 | biofilm regulation protein phosphatase SiaA | - |
Sequence
Protein
Download Length: 384 a.a. Molecular weight: 43008.57 Da Isoelectric Point: 6.6936
>NTDB_id=100536 QUD69_RS06275 WP_228247097.1 1368193..1369347(+) (pilU) [Halopseudomonas aestusnigri strain MFKK]
MEFEKLLRLMVEKGASDLFITAGVPPSMKVNGKILPVTKTPLSPEQTRETVLGVMTEAQRREFAEKRECNFAISARGIGR
FRVSSFYQRNLVGMVLRRIEVNIPTMEELRLPEVLKQLAMTKRGLVIFVGATGTGKSTSLASMIGYRNKHSSGHIISIED
PIEFIHQHQNCIVTQREVGIDTDSFEVALKNTLRQAPDVILIGEVRTKETMDHAVAFAETGHLCLATLHANNANQALDRI
IHFFPTEMHQQVWMDLSLNLKAIVAQQLIPTPDGKGRRAAIEVLLNTPLAADMIRKGEVHELKPLMARSNELGMQTFDQA
LYKLYSAGEITYEDALLHADSANDLRLMIKLGSETDGQHLMQDQLSHGLSLEEEEEVASRTRRF
MEFEKLLRLMVEKGASDLFITAGVPPSMKVNGKILPVTKTPLSPEQTRETVLGVMTEAQRREFAEKRECNFAISARGIGR
FRVSSFYQRNLVGMVLRRIEVNIPTMEELRLPEVLKQLAMTKRGLVIFVGATGTGKSTSLASMIGYRNKHSSGHIISIED
PIEFIHQHQNCIVTQREVGIDTDSFEVALKNTLRQAPDVILIGEVRTKETMDHAVAFAETGHLCLATLHANNANQALDRI
IHFFPTEMHQQVWMDLSLNLKAIVAQQLIPTPDGKGRRAAIEVLLNTPLAADMIRKGEVHELKPLMARSNELGMQTFDQA
LYKLYSAGEITYEDALLHADSANDLRLMIKLGSETDGQHLMQDQLSHGLSLEEEEEVASRTRRF
Nucleotide
Download Length: 1155 bp
>NTDB_id=100536 QUD69_RS06275 WP_228247097.1 1368193..1369347(+) (pilU) [Halopseudomonas aestusnigri strain MFKK]
ATGGAGTTCGAGAAGCTGTTGCGGTTGATGGTCGAGAAGGGTGCGTCCGACCTGTTCATTACCGCCGGTGTGCCACCGAG
CATGAAGGTGAATGGCAAGATCCTGCCGGTTACCAAAACCCCGCTGTCGCCGGAGCAGACCCGCGAAACCGTGCTGGGCG
TGATGACCGAAGCGCAGCGTCGCGAGTTCGCCGAGAAGCGCGAATGCAACTTCGCCATCAGTGCGCGCGGCATTGGCCGG
TTCCGGGTCAGCTCGTTCTATCAGCGCAATCTGGTGGGCATGGTGTTGCGCCGTATCGAGGTCAACATTCCGACCATGGA
AGAACTGCGGCTGCCGGAGGTGCTGAAGCAGCTGGCCATGACCAAGCGCGGTCTGGTGATCTTCGTCGGCGCTACCGGTA
CCGGCAAGTCGACCTCGCTGGCCTCAATGATCGGCTACCGCAACAAGCACTCCAGCGGGCACATCATCTCCATCGAAGAT
CCGATCGAATTCATTCACCAGCATCAGAACTGCATTGTTACCCAGCGCGAGGTCGGTATTGATACCGACTCGTTCGAGGT
GGCGCTGAAGAACACCTTGCGTCAGGCGCCGGACGTGATTCTGATCGGTGAGGTGCGGACCAAGGAAACCATGGATCACG
CGGTGGCCTTTGCCGAAACCGGCCACCTGTGTCTGGCTACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATTCACTTCTTCCCGACCGAGATGCATCAGCAGGTCTGGATGGACCTGTCACTGAATCTCAAGGCGATTGTTGCCCAGCA
GCTGATTCCCACGCCCGATGGCAAGGGCCGTCGGGCTGCCATCGAAGTGCTGCTTAATACGCCGCTGGCCGCCGACATGA
TTCGCAAGGGTGAGGTGCATGAGCTCAAGCCGTTAATGGCCCGCTCCAATGAATTGGGCATGCAGACCTTCGATCAGGCG
CTCTACAAGCTCTACAGTGCCGGCGAGATCACCTATGAAGATGCGCTGTTGCACGCCGACTCGGCGAACGACCTGCGTCT
GATGATCAAGCTGGGCTCGGAAACCGACGGTCAGCACCTGATGCAGGACCAGCTGAGCCACGGCCTGTCGCTGGAAGAAG
AGGAAGAAGTCGCCTCGCGCACGCGGCGGTTCTGA
ATGGAGTTCGAGAAGCTGTTGCGGTTGATGGTCGAGAAGGGTGCGTCCGACCTGTTCATTACCGCCGGTGTGCCACCGAG
CATGAAGGTGAATGGCAAGATCCTGCCGGTTACCAAAACCCCGCTGTCGCCGGAGCAGACCCGCGAAACCGTGCTGGGCG
TGATGACCGAAGCGCAGCGTCGCGAGTTCGCCGAGAAGCGCGAATGCAACTTCGCCATCAGTGCGCGCGGCATTGGCCGG
TTCCGGGTCAGCTCGTTCTATCAGCGCAATCTGGTGGGCATGGTGTTGCGCCGTATCGAGGTCAACATTCCGACCATGGA
AGAACTGCGGCTGCCGGAGGTGCTGAAGCAGCTGGCCATGACCAAGCGCGGTCTGGTGATCTTCGTCGGCGCTACCGGTA
CCGGCAAGTCGACCTCGCTGGCCTCAATGATCGGCTACCGCAACAAGCACTCCAGCGGGCACATCATCTCCATCGAAGAT
CCGATCGAATTCATTCACCAGCATCAGAACTGCATTGTTACCCAGCGCGAGGTCGGTATTGATACCGACTCGTTCGAGGT
GGCGCTGAAGAACACCTTGCGTCAGGCGCCGGACGTGATTCTGATCGGTGAGGTGCGGACCAAGGAAACCATGGATCACG
CGGTGGCCTTTGCCGAAACCGGCCACCTGTGTCTGGCTACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATTCACTTCTTCCCGACCGAGATGCATCAGCAGGTCTGGATGGACCTGTCACTGAATCTCAAGGCGATTGTTGCCCAGCA
GCTGATTCCCACGCCCGATGGCAAGGGCCGTCGGGCTGCCATCGAAGTGCTGCTTAATACGCCGCTGGCCGCCGACATGA
TTCGCAAGGGTGAGGTGCATGAGCTCAAGCCGTTAATGGCCCGCTCCAATGAATTGGGCATGCAGACCTTCGATCAGGCG
CTCTACAAGCTCTACAGTGCCGGCGAGATCACCTATGAAGATGCGCTGTTGCACGCCGACTCGGCGAACGACCTGCGTCT
GATGATCAAGCTGGGCTCGGAAACCGACGGTCAGCACCTGATGCAGGACCAGCTGAGCCACGGCCTGTCGCTGGAAGAAG
AGGAAGAAGTCGCCTCGCGCACGCGGCGGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
84.856 |
99.74 |
0.846 |
| pilU | Acinetobacter baylyi ADP1 |
66.387 |
92.969 |
0.617 |
| pilU | Vibrio cholerae strain A1552 |
60 |
91.146 |
0.547 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.543 |
88.281 |
0.393 |