Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   FGL06_RS02560 Genome accession   NZ_LR594042
Coordinates   483377..484027 (-) Length   216 a.a.
NCBI ID   WP_126437653.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8133     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 478377..489027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL06_RS02535 (NCTC8133_00509) trpC 478585..479352 (+) 768 WP_074628927.1 indole-3-glycerol phosphate synthase TrpC -
  FGL06_RS02540 (NCTC8133_00510) - 479339..479920 (+) 582 WP_126437650.1 phosphoribosylanthranilate isomerase -
  FGL06_RS02545 (NCTC8133_00511) trpB 479917..481119 (+) 1203 WP_021141842.1 tryptophan synthase subunit beta -
  FGL06_RS02550 (NCTC8133_00512) trpA 481123..481905 (+) 783 WP_126437651.1 tryptophan synthase subunit alpha -
  FGL06_RS02555 (NCTC8133_00513) - 481942..483282 (-) 1341 WP_138083564.1 Nramp family divalent metal transporter -
  FGL06_RS02560 (NCTC8133_00514) cclA/cilC 483377..484027 (-) 651 WP_126437653.1 prepilin peptidase Machinery gene
  FGL06_RS02565 (NCTC8133_00515) - 484169..484693 (+) 525 WP_021141848.1 Dps family protein -
  FGL06_RS02570 (NCTC8133_00516) - 484820..485029 (+) 210 WP_024344227.1 YqgQ family protein -
  FGL06_RS02575 (NCTC8133_00517) - 485022..485990 (+) 969 WP_021141850.1 ROK family glucokinase -
  FGL06_RS02580 (NCTC8133_00518) - 486001..486381 (+) 381 WP_021141851.1 rhodanese-like domain-containing protein -
  FGL06_RS02585 (NCTC8133_00519) typA 486567..488411 (+) 1845 WP_004230714.1 translational GTPase TypA -
  FGL06_RS02590 (NCTC8133_00520) - 488624..488896 (+) 273 WP_021141853.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24778.95 Da        Isoelectric Point: 7.4494

>NTDB_id=1005350 FGL06_RS02560 WP_126437653.1 483377..484027(-) (cclA/cilC) [Streptococcus equinus strain NCTC8133]
MDILLFFFLGASFASFIGLIIDRFPDESILFPASHCETCGKKLEVRDLIPVFSQIINRSRCRFCHTKLPIWYGIFEFICG
ILTAVCYQGMLPLSILFIIFLSLTLSIYDLKYQSFPLLIWLLPSCCLLPVTPIKTLTIILLLFGIIAELIDVKLGSGDCF
YLATLSLFLDLQNTLWIVEIGSFTGIIFCLLHKNKRIPFVPFLFFGYLFTLFFKYT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=1005350 FGL06_RS02560 WP_126437653.1 483377..484027(-) (cclA/cilC) [Streptococcus equinus strain NCTC8133]
ATGGACATTTTATTATTCTTTTTTCTCGGAGCATCCTTTGCTTCTTTCATCGGCTTAATAATTGACCGCTTTCCAGACGA
ATCTATTCTTTTTCCAGCTAGTCATTGTGAGACTTGTGGTAAGAAGCTTGAGGTTCGTGATTTGATTCCTGTATTTTCAC
AAATTATCAATCGATCGCGCTGCCGTTTTTGTCACACAAAACTCCCAATTTGGTATGGCATTTTTGAATTCATCTGCGGA
ATATTAACTGCCGTCTGCTATCAAGGAATGCTGCCACTCTCGATACTCTTTATTATCTTTTTAAGTCTCACGCTCAGTAT
CTACGATTTAAAATACCAATCATTTCCTTTACTAATATGGTTGCTCCCGAGTTGCTGTTTACTCCCAGTTACACCAATCA
AAACTCTCACTATTATCCTTTTGTTGTTTGGAATCATTGCAGAGCTGATTGATGTGAAACTTGGTAGTGGAGATTGTTTT
TATCTAGCAACTTTGAGCCTTTTTTTGGACTTACAAAACACTTTATGGATTGTAGAAATCGGGTCATTTACAGGAATTAT
TTTTTGTCTTTTACACAAAAATAAACGAATTCCTTTTGTGCCTTTTCTCTTTTTTGGATACCTTTTTACATTATTTTTTA
AGTATACTTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

41.429

97.222

0.403
  cclA/cilC Streptococcus pneumoniae TIGR4

40.952

97.222

0.398
  cclA/cilC Streptococcus mitis SK321

40.476

97.222

0.394
  cclA/cilC Streptococcus pneumoniae Rx1

40.476

97.222

0.394
  cclA/cilC Streptococcus pneumoniae D39

40.476

97.222

0.394
  cclA/cilC Streptococcus pneumoniae R6

40.476

97.222

0.394