Detailed information NTG1005318

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: FGL06_RS00290
• Genome accession: NZ_LR594042
• Coordinates: 46243..47241 (+)
• Length: 332 a.a.
• NCBI ID: WP_021141399.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain NCTC8133
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 41243..52241

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGL06_RS00260 (NCTC8133_00051)	-	41361..41810 (+)	450	WP_126437520.1	DUF523 domain-containing protein	-
FGL06_RS00265 (NCTC8133_00052)	purE	41810..42298 (+)	489	WP_021141395.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
FGL06_RS00270 (NCTC8133_00053)	purK	42285..43376 (+)	1092	WP_126437521.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
FGL06_RS00275 (NCTC8133_00054)	-	43398..43622 (+)	225	WP_027968247.1	hypothetical protein	-
FGL06_RS00280 (NCTC8133_00055)	purB	43713..45011 (+)	1299	WP_024344772.1	adenylosuccinate lyase	-
FGL06_RS00285 (NCTC8133_00056)	comR	45161..46072 (+)	912	WP_039691866.1	helix-turn-helix domain-containing protein	Regulator
FGL06_RS00290 (NCTC8133_00057)	ruvB	46243..47241 (+)	999	WP_021141399.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
FGL06_RS00295 (NCTC8133_00058)	-	47451..47882 (+)	432	WP_126437522.1	low molecular weight protein-tyrosine-phosphatase	-
FGL06_RS00300 (NCTC8133_00059)	-	47899..48279 (+)	381	WP_021141401.1	MORN repeat-containing protein	-
FGL06_RS00305 (NCTC8133_00060)	-	48276..50069 (+)	1794	WP_126437523.1	acyltransferase family protein	-
FGL06_RS00315 (NCTC8133_00061)	thrC	50422..51906 (+)	1485	WP_074484046.1	threonine synthase	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37462.01 Da
• Isoelectric Point: 4.6212

>NTDB_id=1005318 FGL06_RS00290 WP_021141399.1 46243..47241(+) (ruvB) [Streptococcus equinus strain NCTC8133]
MSRILDNDIMGDEEFVERTLRPQYLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGNGETSRSVHLELPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAVEDLTEIVERTADIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIIT
KDITDKALTMLDVDHEGLDYIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATAK
AYEHLGYPYIEK

Nucleotide

• Length: 999 bp

>NTDB_id=1005318 FGL06_RS00290 WP_021141399.1 46243..47241(+) (ruvB) [Streptococcus equinus strain NCTC8133]
ATGAGCAGAATTTTAGATAATGATATTATGGGTGATGAAGAGTTTGTGGAACGTACGCTTCGTCCTCAATATTTAAAAGA
ATATATTGGACAGGATAAGGTAAAAAATCAGCTGAAAATTTTTATTGAAGCTGCTAAATTACGAGATGAGTCATTGGACC
ATGTGCTGTTATTTGGCCCTCCGGGGTTAGGTAAGACGACAATGGCATTTGTGATTGCTAATGAACTAGGGGTGAATTTA
AAACAAACATCTGGACCGGCTATTGAAAAGGCTGGTGATTTGGTTGCGATTCTGAATGACTTAGAACCAGGTGATGTGTT
GTTTATTGATGAAATTCATCGTATGCCAATGGCAGTAGAAGAAGTGCTTTATAGCGCAATGGAAGATTTCTATATTGATA
TTATGATTGGTAATGGTGAGACTAGTCGTAGTGTCCATTTAGAATTGCCACCTTTTACTTTGATTGGTGCGACAACGCGT
GCAGGAATGCTTTCAAATCCATTGCGTGCACGTTTTGGTATCACTGGTCACATGGAATACTATGCTGTTGAAGATTTGAC
AGAAATTGTAGAACGTACGGCTGATATTTTTGAGATGGAAATTGTCCATGAAGCCGCACAAGAATTAGCGCGACGCAGTC
GTGGAACGCCACGTATCGCTAACCGTTTGTTGAAACGTGTGCGTGATTATGCCCAAATCATGGGCGATGGTATCATTACA
AAAGACATTACAGATAAAGCATTGACGATGCTTGATGTTGATCACGAGGGGCTTGATTATATTGACCAAAAAATCTTGCG
CACGATGATTGAAGTTTATAACGGTGGGCCTGTTGGTTTAGGGACTCTTTCTGTTAACATCGCAGAAGAACGTGATACGG
TTGAAGATATGTATGAACCCTATTTGATTCAAAAAGGATTTATCATGCGTACCAGAACTGGGCGCGTGGCAACTGCTAAG
GCATATGAACATTTAGGATATCCTTATATAGAAAAATAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.663	100	0.907
ruvB	Streptococcus pneumoniae R6	90.663	100	0.907
ruvB	Streptococcus pneumoniae D39	90.663	100	0.907
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.61	97.289	0.599
ruvB	Helicobacter pylori 26695	49.39	98.795	0.488
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47