Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   FGK97_RS03825 Genome accession   NZ_LR594037
Coordinates   765871..767859 (+) Length   662 a.a.
NCBI ID   WP_021001597.1    Uniprot ID   -
Organism   Streptococcus anginosus strain NCTC11064     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 760871..772859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK97_RS03810 (NCTC11064_00772) - 761735..762475 (-) 741 WP_003024883.1 amino acid ABC transporter ATP-binding protein -
  FGK97_RS03815 (NCTC11064_00773) - 762475..764658 (-) 2184 WP_021001596.1 ABC transporter substrate-binding protein/permease -
  FGK97_RS03820 (NCTC11064_00774) - 764821..765780 (+) 960 WP_003024878.1 CPBP family intramembrane glutamic endopeptidase -
  FGK97_RS03825 (NCTC11064_00775) uvrB 765871..767859 (+) 1989 WP_021001597.1 excinuclease ABC subunit UvrB Machinery gene
  FGK97_RS03830 (NCTC11064_00776) - 767890..768435 (+) 546 WP_021001598.1 DUF1697 domain-containing protein -
  FGK97_RS03835 (NCTC11064_00777) pptA 768565..769308 (+) 744 WP_021001599.1 ABC transporter ATP-binding protein Regulator
  FGK97_RS03840 (NCTC11064_00778) - 769298..770938 (+) 1641 WP_021001600.1 hypothetical protein -
  FGK97_RS03845 (NCTC11064_00779) hemW 771063..772193 (+) 1131 WP_138099385.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 75691.60 Da        Isoelectric Point: 4.4847

>NTDB_id=1005152 FGK97_RS03825 WP_021001597.1 765871..767859(+) (uvrB) [Streptococcus anginosus strain NCTC11064]
MINRITDNKFKLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIQKVNKPTLVIAHNKTLAGQLYG
EFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
DSVVSLRPGLEISRDQLLNDLVDIQFERNDIDFQRGKFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREVEALTGQVL
GEVDHLAIFPATHFMTNDENMEIAIGKIQAELEEQLAFFEREGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPDDFLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEREQTDTVIEQIIRPTGLLDPEVEVRPTMGQIDDLLGEINARAEKNERTFITTLTKKMAEDLTDYFKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADT
ITDSMQKAMDETARRRQIQMAYNEEHGIVPQTIQKEIRDLISVTKSALPDKEEVVDIESLNKQERKDMIKKLEGQMQEAA
GLLDFELAAQIRDMILEIKAVD

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=1005152 FGK97_RS03825 WP_021001597.1 765871..767859(+) (uvrB) [Streptococcus anginosus strain NCTC11064]
ATGATAAATAGAATTACGGACAATAAATTTAAATTAGTTTCCAAGTATGAGCCTTCAGGAGATCAACCACAGGCGATTGA
GCAATTAGTGGATAATATAGAGGGTGGTGAGAAAGCTCAGATTCTCATGGGAGCGACAGGAACTGGGAAGACCTACACTA
TGAGTCAGGTCATCCAAAAGGTCAATAAACCGACCCTAGTTATCGCTCATAATAAAACTCTGGCTGGTCAGCTCTATGGT
GAATTTAAGGAGTTTTTTCCTGACAATGCGGTAGAGTATTTTGTGTCTTACTATGACTATTACCAACCAGAAGCCTATGT
GCCTTCCAGTGATACCTATATTGAGAAGGACAGCTCGGTCAATGATGAGATTGACAAACTTCGTCACTCAGCAACCTCGG
CTCTCTTGGAGCGCAACGATGTGATTGTTGTGGCATCAGTCAGCTGCATTTATGGTTTGGGCTCGCCTAAGGAATACTCC
GATAGCGTGGTCAGTCTGCGACCTGGTTTAGAGATTTCACGGGATCAACTTCTCAATGATTTGGTTGATATTCAATTTGA
GCGCAATGATATTGACTTTCAGCGGGGAAAATTTCGTGTGCGTGGCGATGTTGTGGAAATCTTCCCAGCTTCTCGCGATG
AACATGCCTTTCGGGTGGAATTTTTCGGTGATGAAATTGACCGCATTCGAGAAGTGGAAGCATTGACAGGTCAAGTGTTG
GGCGAAGTAGACCATTTAGCTATTTTTCCTGCCACTCACTTTATGACCAATGACGAAAATATGGAGATTGCTATTGGCAA
GATTCAAGCGGAATTAGAAGAACAACTAGCCTTTTTTGAAAGAGAAGGGAAACTTTTAGAAGCTCAGCGGTTGAAGCAAA
GAACGGATTATGATATTGAAATGCTACGCGAAATGGGCTACACGAATGGTGTAGAGAATTATTCTCGTCACATGGACGGA
CGGAGTGAAGGTGAGCCACCTTATACACTCTTGGATTTCTTTCCAGATGATTTTTTGATTATGATTGACGAAAGTCACAT
GACTATGGGCCAGATTAAGGGGATGTATAATGGTGACCGTTCACGAAAGGAAATGTTGGTTAATTACGGCTTCCGTCTGC
CATCAGCTTTGGACAATCGCCCGCTACGTCGGGAAGAGTTTGAAAGTCATGTTCATCAGATTGTCTATGTATCTGCGACA
CCGGGCGACTATGAGCGGGAGCAAACGGATACGGTGATTGAGCAAATTATTCGACCAACTGGTCTGCTGGATCCAGAAGT
CGAAGTGCGTCCGACTATGGGACAAATAGATGATCTTTTAGGCGAAATTAACGCACGTGCTGAAAAGAATGAGCGGACTT
TTATTACGACTTTAACCAAGAAAATGGCGGAGGATTTGACCGACTACTTCAAGGAAATGGGTGTCAAGGTCAAGTATATG
CACTCAGATATCAAGACTCTAGAGCGGACAGAAATTATCCGCGACCTGCGGTTAGGTGTCTTTGATGTTTTAGTCGGGAT
TAACCTGTTGCGTGAGGGGATTGATGTGCCAGAGGTTAGTCTGGTTGCCATTCTTGATGCAGATAAGGAAGGCTTCTTAC
GCAATGAGCGTGGTTTAATCCAAACCATTGGTCGAGCTGCCCGTAATAGTGAAGGCCACGTCATCATGTATGCTGACACG
ATCACAGATTCCATGCAAAAAGCTATGGATGAAACCGCCCGTCGTCGTCAGATTCAAATGGCTTATAATGAAGAACATGG
TATTGTACCGCAAACAATCCAGAAAGAAATCCGTGACCTAATCAGTGTGACAAAATCTGCTCTACCAGACAAGGAAGAAG
TGGTAGATATTGAAAGTCTTAACAAGCAGGAACGTAAAGATATGATTAAGAAACTAGAGGGACAAATGCAAGAAGCGGCT
GGTCTTTTGGATTTCGAACTTGCCGCTCAAATTCGCGATATGATTTTGGAGATTAAGGCGGTGGATTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-143)

UvrB/uvrC motif (UVR)

(626-660)

UvrB interaction domain (UvrB_inter)

(164-254)

Ultra-violet resistance protein B (UvrB)

(556-598)

Helicase conserved C-terminal domain (Helicase_C)

(443-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

92.9

100

0.929
  uvrB Streptococcus pneumoniae D39

92.9

100

0.929
  uvrB Streptococcus pneumoniae TIGR4

92.749

100

0.927

Multiple sequence alignment